Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 164 / 7e-46 IQD19 IQ-domain 19 (.1) AT1G01110 59 / 5e-09 IQD18 IQ-domain 18 (.1.2) AT4G00820 59 / 6e-09 IQD17 IQ-domain 17 (.1) AT4G29150 55 / 7e-08 IQD25 IQ-domain 25 (.1) AT1G17480 53 / 2e-07 IQD7 IQ-domain 7 (.1) AT4G23060 52 / 4e-07 IQD22 IQ-domain 22 (.1) AT1G72670 52 / 6e-07 IQD8 IQ-domain 8 (.1) AT3G49260 51 / 1e-06 IQD21 IQ-domain 21 (.1.2.3) AT5G07240 51 / 1e-06 IQD24 IQ-domain 24 (.1) AT1G18840 50 / 3e-06 IQD30 IQ-domain 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021904 [exp] 563 / 0 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10006613 [exp] 278 / 6e-88 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10039366 [exp] 160 / 6e-46 AT4G14750 71 / 2e-14 IQ-domain 19 (.1) Lus10012608 [exp] 61 / 9e-10 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 61 / 1e-09 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10005760 [exp] 57 / 2e-08 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10014870 [exp] 57 / 3e-08 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10027435 [exp] 56 / 5e-08 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10009187 [exp] 52 / 6e-07 AT4G14750 114 / 8e-28 IQ-domain 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082600 [exp] 264 / 3e-83 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.008G156700 [exp] 243 / 5e-75 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.014G104600 [exp] 63 / 3e-10 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.013G038901 [exp] 61 / 5e-10 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.002G178500 [exp] 62 / 7e-10 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.012G139800 [exp] 57 / 1e-08 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.006G226600 [exp] 56 / 5e-08 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.015G142200 [exp] 54 / 1e-07 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.003G047800 [exp] 53 / 2e-07 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.001G190500 [exp] 53 / 3e-07 AT3G16490 293 / 5e-96 IQ-domain 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10041188 pacid=23179670 polypeptide=Lus10041188 locus=Lus10041188.g ID=Lus10041188.BGIv1.0 annot-version=v1.0 ATGGGGAAGACTGGAAAATGGCTCAAGAGTTTCTTGACTGGGAAGAAACAAAAGGATAAGCTAAGAGAATCGAAGGAAACTTGTATCATCACTGCCAAGG GAACATGCATCATCAGTACTTATCAGGATTCAAATGTTAATCTTGAAAGTCCAGCAGCCACTCCAATTCCCCACCCGCCGACCACTCCTAAAGAGAAGCG GAGATGGAGCTTCAGAAGGTCATCCGCTGCCGCCGCCACCGGATCAATGGCCAATTCTGCAGAACCACCTTCTCCCTTGGCCCTCACAGTTGTTGTCCCT ACTACGGCTCCTCCAGCTGTGCAGGCTCAGTTGGGCTCCGAAGATGAGCATAAGAAGCACGCAATGGCGATGGCCGCTGCTACAGCTGCCACCGCCGATG CTGCAATGGCTGTTGCCCAGGCTGCAGCTGCTGTAATCCGCCTCGCTGCAGAAAGGAACGCCGCAATTGAAGAGGCTGCGGCTCTTTTGATTCAGTCTGT GTTCCGGTCTTACTTGGCGAGGAAGGCATTGAGAGCGCTGAAAGGATTAGTGAAGCTACAAGCACTTGTCAGAGGACATCTCGTGAGAAAACAAGCTACT GCCACTCTTCGGTGTATGCAAGCATTGGTGACACTGCAGGCTAAAGCTCTCGCTCAGAGGATTCGACCCGACGACGGGAAGCCCCCTTCCGGCCAGAGGC CACACTCTTCCCACAGGAAATCCACTCATCAGGAGAATCGATACAGACTCACTAATTACGATTCTGATAGGGGATTAATGGAGGAGAACATCAAGACAGT AGAAATGGATCTGGGAGGAGGAGGTCCGAAAGGAAGCATAAAGGCGCACCGAAACAGCTATTCAGATCGGAGATCTTCCCCCAACCAAATTTCACAACAA CCGGATTTCCTCCAGGTGTCTCCGACTCCGTCGTCGGCATTAACAGAGATGAGCCCTAGAGCTTACAGCGCTCATTTCGAGGACCGTTCCTTCGGCAGCC CGGAATGCTACTCCGCGATCTCGAAACCTGATTCATCTGCCGTCCCGTTCGCTCTCGAACCACAAGATTGTCCGGAATCGCTGTCGTACTACGACTACAC GATGTTCCCGAGCTACATGGCGAACACGCAGTCGTCGAGGGCGAAAGCGAGGTCCCAGAGCGCGCCCAAGAGCAGACCGGAGACTTACGAGCGACAGACG AGCAGGAGAAGGCCGTCGATTGAAGGGAGGAACGGCGGCGGCGCCGCCAGCGCGGGGGGGGGGGTGTGGCGGGGCGGATGGGGGACGGGTGGGGCGAGGG GCGGAGGCGCGGGGGGGGACACCGCCGCCGCGCAGAATCATCGCCAGTTTCCGTGGGCGGTTAATCTGGACAGATCGTCGGTTTCGGTCATGGAGAGCGA ATGTGGATCGTCTAGTACGGTGATTACCAACGCCAATTACTGCAGGTCGCTTGTCGGATTCGATGTGAGTCGGTGA
AA sequence Show only first row Show all	>Lus10041188 pacid=23179670 polypeptide=Lus10041188 locus=Lus10041188.g ID=Lus10041188.BGIv1.0 annot-version=v1.0 MGKTGKWLKSFLTGKKQKDKLRESKETCIITAKGTCIISTYQDSNVNLESPAATPIPHPPTTPKEKRRWSFRRSSAAAATGSMANSAEPPSPLALTVVVP TTAPPAVQAQLGSEDEHKKHAMAMAAATAATADAAMAVAQAAAAVIRLAAERNAAIEEAAALLIQSVFRSYLARKALRALKGLVKLQALVRGHLVRKQAT ATLRCMQALVTLQAKALAQRIRPDDGKPPSGQRPHSSHRKSTHQENRYRLTNYDSDRGLMEENIKTVEMDLGGGGPKGSIKAHRNSYSDRRSSPNQISQQ PDFLQVSPTPSSALTEMSPRAYSAHFEDRSFGSPECYSAISKPDSSAVPFALEPQDCPESLSYYDYTMFPSYMANTQSSRAKARSQSAPKSRPETYERQT SRRRPSIEGRNGGGAASAGGGVWRGGWGTGGARGGGAGGDTAAAQNHRQFPWAVNLDRSSVSVMESECGSSSTVITNANYCRSLVGFDVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10041188 [exp]	0	1
					Lus10032253 [exp]	4.2	0.9651
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	5.5	0.9623
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	7.9	0.9615
AT3G61920			unknown protein		Lus10023060 [exp]	11.0	0.9559
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	11.1	0.9590
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10028036 [exp]	11.3	0.9001
AT5G27920			F-box family protein (.1)		Lus10020676 [exp]	12.9	0.8909
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	13.6	0.9557
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	15.4	0.9427
					Lus10024615 [exp]	18.1	0.9507

Compare expression of checked genes

Lus10041188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.