Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04190 501 / 3e-180 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62740 100 / 4e-23 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 94 / 3e-21 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 93 / 9e-21 Hop1 Hop1, stress-inducible protein, putative (.1) AT3G04710 86 / 3e-18 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G42810 79 / 4e-16 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT5G09420 73 / 4e-14 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT4G08320 71 / 2e-13 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G53300 71 / 3e-13 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G17970 69 / 8e-13 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021905 [exp] 623 / 0 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004336 [exp] 92 / 3e-20 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 91 / 5e-20 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 91 / 6e-20 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10028919 [exp] 89 / 3e-19 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10042001 [exp] 82 / 4e-17 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10006559 [exp] 81 / 2e-16 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10009682 [exp] 81 / 2e-16 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10003260 [exp] 80 / 2e-16 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082900 [exp] 543 / 0 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G156500 [exp] 534 / 0 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G119500 [exp] 97 / 3e-22 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.003G113400 [exp] 96 / 1e-21 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.013G042300 [exp] 90 / 6e-20 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G054800 [exp] 86 / 2e-18 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.012G046900 [exp] 82 / 4e-17 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 81 / 1e-16 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 77 / 3e-15 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.014G141800 [exp] 76 / 5e-15 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10041189 pacid=23179842 polypeptide=Lus10041189 locus=Lus10041189.g ID=Lus10041189.BGIv1.0 annot-version=v1.0 ATGGCGGAAACAGCTCGAGGATCGGCTACAAATGGAACCCAGATGTCATTGAAAGATCAGGGGAACGAATTCTTCAAAGCCGGAAACTTCCTCAAAGCTG CTGCTGTCTACACCCAGGCTATCAAGCTCGACCCTTCTAATCCGACTCTATATAGTAATCGTGCTGCTGCGTTTGTGCAACTGGTTAAGCTGAATAAAGC ACTTGCTGATGCTGAGACCACTATCAAACTCAACCCACAGTGGGAGAAGGGTTATTTCAGGAAAGGGTGTGTATTGGAGGTCATGGAACGGTATGATGAT GCCTTGGAATCCTTCCAAGAAGCTTTACAGTACAACCCACAAAGTGCAGAAGTATCTAGAAAGATTAAGAGGATAACTCAATTAGCAAGGGACAAAAAGA GAGCTCAAGAGGTGGAGAGCATGAGATCAAATATTGATATCGCAAAGCACTTGAATCAGTTTAAAGCTGAAATGTCAGGGAAGCTTGAATCTGAAGAATT GGAGAAAGAAGTGTTCTCTTTCATTGTTGATACAATGGAGACAGCTGTTAAGTCATGGCATGAAACTTCTAAAGTGGATCCAAGAGTCTTCTTTCTTTTG GATAAGGAAAAGACACAAACTGATAAATATGCTCCAATGGTCAACATTGACAAGGCCTTTGAATCACCTCATACACACAGCAATTGCTTCTCATTCCTAA GGCAGTATGCCGAAGAATCATACTCCAAAGCAGCTTGCTTAATTGTGGCCAAGAATATCATAGCTTACCCGCAGGTTTGGAAAGGTCAAGGATCAAGGAA GTGGAAGCATGGCCAACTTGATGGCTTCTTCGTTCAGTTCGAGTCACCAACTTCGCGGCAATTGTGGTTTGTCGCTAGCACAACCGAAAGAGGGAAAACA CTGTGCAGTGACCCAGAGAGCCTAGATATCAGTACACATGAAGTCATCCCGCGAATTTTCAAAGAGAAGTTGAGCACTTCCTAG
AA sequence Show only first row Show all	>Lus10041189 pacid=23179842 polypeptide=Lus10041189 locus=Lus10041189.g ID=Lus10041189.BGIv1.0 annot-version=v1.0 MAETARGSATNGTQMSLKDQGNEFFKAGNFLKAAAVYTQAIKLDPSNPTLYSNRAAAFVQLVKLNKALADAETTIKLNPQWEKGYFRKGCVLEVMERYDD ALESFQEALQYNPQSAEVSRKIKRITQLARDKKRAQEVESMRSNIDIAKHLNQFKAEMSGKLESEELEKEVFSFIVDTMETAVKSWHETSKVDPRVFFLL DKEKTQTDKYAPMVNIDKAFESPHTHSNCFSFLRQYAEESYSKAACLIVAKNIIAYPQVWKGQGSRKWKHGQLDGFFVQFESPTSRQLWFVASTTERGKT LCSDPESLDISTHEVIPRIFKEKLSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	0	1
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	1.0	0.9132
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	2.0	0.8415
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	4.0	0.8132
AT4G24820			26S proteasome, regulatory sub...		Lus10027348 [exp]	4.6	0.8343
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	9.6	0.8222
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	10.1	0.8188
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	10.7	0.7852
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	10.7	0.8189
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10009294 [exp]	11.7	0.7925
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	12.7	0.7894

Compare expression of checked genes

Lus10041189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.