Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22800 385 / 5e-131 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 377 / 4e-124 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT3G24480 367 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 359 / 2e-116 Leucine-rich repeat (LRR) family protein (.1) AT4G28380 329 / 4e-110 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 339 / 6e-109 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 323 / 2e-103 LRX1 leucine-rich repeat/extensin 1 (.1) AT5G25550 301 / 2e-98 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 310 / 8e-97 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 301 / 2e-94 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039363 [exp] 443 / 9e-152 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 431 / 1e-149 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 364 / 7e-124 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 357 / 1e-116 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 326 / 9e-109 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 331 / 2e-108 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10037905 [exp] 309 / 2e-101 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 275 / 4e-86 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 266 / 2e-82 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083000 [exp] 405 / 2e-139 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 385 / 3e-132 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 360 / 7e-120 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 362 / 4e-119 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 347 / 5e-115 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G081200 [exp] 355 / 1e-114 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.007G139200 [exp] 327 / 3e-109 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 328 / 2e-107 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 313 / 2e-101 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 308 / 5e-99 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041190 pacid=23179719 polypeptide=Lus10041190 locus=Lus10041190.g ID=Lus10041190.BGIv1.0 annot-version=v1.0 ATGAAAAACAAAAACAATAATCCACTTCTCACTGCAGCCCTTTGGGTCTCCTACCTACTCTTCACAATTATTCTCTTCATCATTCAACCCTCAACCCAAT CTTCTCTACTTCCTCCACTGCCGCCGCCGACAAACCCTAGGCTCCTAAACGCCTACATAGCCCTCAAAAAATGGAAACTACTCATCACCTCCGACCCAAA AGCCTTCACCTCCAACTGGTACGGCCCCAACGTATGCACTTACAATGGCGTATACTGCGCCCCGTCGCCCGACGACTCCAAAACCCTAACGGTCGCTGGA ATAGACCTCAACCACGCCGACATTTCCGGCTACCTCCCGGAGGAGCTCGGCCTCCTCACCGACCTTGCATTGTTCCACATCAACTCAAACCGCTTCATGG GTACCTTACCATACAGCTTCCGCTTCCTCAAACTCCTCTTCGAGCTCGACGTCAGCAACAACCTTTTTTCTGGCGACTTCCCTTCCGTCGTCTTATCCCT CCCTTCCTTAAAGTTCCTAGACATAAGGTTCAACCAGTTCCTAGGAAACGTCCCTTCGAAGCTCTTCGACATGACGTCACTCGACGCCATCTTCCTAAAC GACAACGGATTCGCCTCTTCCTCTCTGCTGCCTCCTAACTTAGGGAACTCCCCGGCGTCGGTGATTGTATTGGCGAATAACGACGTCAACAGTGGTGGAG GAAAAACAAAAAAATTGTGTGTTCCGGCAAGTTTGACCAAGATGGGCCCCACGTTGAGAGAGATTGTTTTGATGAATATGGGCCTGACGGGATGTTTGCA GCCCAACTTGGGTGGGCTAGACCAACTCACGGTGTTTGACGTCAGCTTTAACGAGCTGGTGGGCCCGCTGCCGGAGTTGATGGCGAAGATGAGCAAGTTG GAGCAGCTGAATGTGGGCCATAACAAGCTGTCGGGTGAGGTGTCGGCGGCTGTCTGTGGGCTGCCGGCGTTGAGAAATTTTACGTATTCATATAATTACT TCGATAAGGAGTCAGTGGTGTGTCTTGGGTTGGCGGCGGAGGATGACCGGGGCAACTGTATACCGAACAGGCCGTTGCAGAGGTCGGCTGGGGAATGTAA GGCGGTTTATCTTTCTCCTGTTGACTGCAGTAATGCTTCTTCTGGGTGCATCATGCCTTTGAGGTCGCCGTTGACTACTTTACCACCACCGTCGACCCCG CTACCTTCGCATCCTCCGATGATGATGTCATGTCCACCACCTGGGCATTATTAA
AA sequence Show only first row Show all	>Lus10041190 pacid=23179719 polypeptide=Lus10041190 locus=Lus10041190.g ID=Lus10041190.BGIv1.0 annot-version=v1.0 MKNKNNNPLLTAALWVSYLLFTIILFIIQPSTQSSLLPPLPPPTNPRLLNAYIALKKWKLLITSDPKAFTSNWYGPNVCTYNGVYCAPSPDDSKTLTVAG IDLNHADISGYLPEELGLLTDLALFHINSNRFMGTLPYSFRFLKLLFELDVSNNLFSGDFPSVVLSLPSLKFLDIRFNQFLGNVPSKLFDMTSLDAIFLN DNGFASSSLLPPNLGNSPASVIVLANNDVNSGGGKTKKLCVPASLTKMGPTLREIVLMNMGLTGCLQPNLGGLDQLTVFDVSFNELVGPLPELMAKMSKL EQLNVGHNKLSGEVSAAVCGLPALRNFTYSYNYFDKESVVCLGLAAEDDRGNCIPNRPLQRSAGECKAVYLSPVDCSNASSGCIMPLRSPLTTLPPPSTP LPSHPPMMMSCPPPGHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	0	1
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	2.0	0.9232
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	2.4	0.9058
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	11.0	0.8858
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	13.1	0.8990
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	14.1	0.9038
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10004037 [exp]	16.1	0.8401
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	22.1	0.8768
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	23.0	0.8818
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	23.6	0.8752
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	26.4	0.8570

Compare expression of checked genes

Lus10041190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.