Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34670 364 / 2e-128 Ribosomal protein S3Ae (.1) AT3G04840 357 / 1e-125 Ribosomal protein S3Ae (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021907 [exp] 453 / 9e-164 AT4G34670 390 / 7e-139 Ribosomal protein S3Ae (.1) Lus10006609 [exp] 390 / 7e-139 AT4G34670 441 / 1e-158 Ribosomal protein S3Ae (.1) Lus10039360 [exp] 382 / 1e-135 AT4G34670 439 / 6e-158 Ribosomal protein S3Ae (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156300 [exp] 375 / 6e-133 AT3G04840 414 / 7e-148 Ribosomal protein S3Ae (.1) Potri.010G083200 [exp] 370 / 9e-131 AT3G04840 407 / 2e-145 Ribosomal protein S3Ae (.1) Potri.005G051200 [exp] 369 / 2e-130 AT4G34670 418 / 1e-149 Ribosomal protein S3Ae (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01015 [flax] [poplar] Ribosomal_S3Ae Ribosomal S3Ae family
Representative CDS sequence Show only first row Show all	>Lus10041191 pacid=23179645 polypeptide=Lus10041191 locus=Lus10041191.g ID=Lus10041191.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGGAAGAACAAGCGTATTTCGAAGAGTAAAAAGGGTGGCAAGAAGAAAGCAGCTGATCCATTTGCGAAGAAGGATTGGTATGACATTAAAG CTCCTTCAATGTTCACCGCTAAGAGTGTGGGGAAGACTCTTGTGTCCCGTACTCAGGGTACCAAGATTGCATCAGAAGGGCTCAAGCACAGAGTGTTTGA GGTCTCTCTTGGTGACCTTCAAAATGATGAAGATCTTGCATTCAGGAAGATCAGGCTGAGGGCTGAGGATGTTCAGGGCAAGAATGTCCTGACTAATTTC TGGGGAATGGATTTCACTACGGACAAGTTGAGGTCCTTGGTCCGGAAATGGCAAAGTTTGATTGAAGCTCACGTTGATGTGAAGACCACCGACAACTACA CTTTGAGGATGTTCTGCATTGCTTTCACTAAGAGGCGGCCAAATCAGGTCAAGAGAACCTGCTATGCTCAGTCTAGCCAGATCAGGCAGATCCGCAGGAA GATGAGGGAAATCATGCTTTCACAAGCTGCAACTTGTGATCTTAAGGAATTGGTCCTTAAGTTTATCCCTGAAGCTATTGGAAAAGAGATTGATAAGGCA ACTGTTGGCATCTACCCTCTGCAGAATGTCTTCATCCGAAAAGTCCATGGTGATTACTCTGACGATGTTGGTGTGAAGGTGGAGAGAACTGCTGAAGATG AACCGATGGCTGATGCCCCTGTTGCTGAAGTTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10041191 pacid=23179645 polypeptide=Lus10041191 locus=Lus10041191.g ID=Lus10041191.BGIv1.0 annot-version=v1.0 MAAGKNKRISKSKKGGKKKAADPFAKKDWYDIKAPSMFTAKSVGKTLVSRTQGTKIASEGLKHRVFEVSLGDLQNDEDLAFRKIRLRAEDVQGKNVLTNF WGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRMFCIAFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMLSQAATCDLKELVLKFIPEAIGKEIDKA TVGIYPLQNVFIRKVHGDYSDDVGVKVERTAEDEPMADAPVAEVVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	0	1
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	1.4	0.9345
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	2.4	0.8968
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10038185 [exp]	3.0	0.8946
AT5G15550			Transducin/WD40 repeat-like su...		Lus10024727 [exp]	4.0	0.8945
AT4G28510		ATPHB1	prohibitin 1 (.1)		Lus10019161 [exp]	5.3	0.8808
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	5.5	0.8878
AT1G10840		TIF3H1	translation initiation factor ...		Lus10020427 [exp]	6.5	0.8878
AT3G05560			Ribosomal L22e protein family ...		Lus10037498 [exp]	7.5	0.8596
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	11.3	0.8719
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	13.4	0.8710

Compare expression of checked genes

Lus10041191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.