Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22670 531 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04130 328 / 4e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G71060 212 / 6e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 212 / 8e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 207 / 2e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62540 207 / 2e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 205 / 3e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G14820 207 / 4e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 206 / 7e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 194 / 4e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015827 [exp] 306 / 8e-98 AT3G04130 535 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036975 [exp] 273 / 3e-86 AT3G04130 473 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10001633 [exp] 225 / 2e-66 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015741 [exp] 215 / 1e-61 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 206 / 1e-58 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003461 [exp] 204 / 6e-58 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 200 / 1e-56 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034419 [exp] 194 / 1e-54 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 194 / 1e-54 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G084000 [exp] 659 / 0 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083900 [exp] 579 / 0 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083800 [exp] 562 / 0 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G055500 [exp] 349 / 3e-114 AT3G04130 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G181900 [exp] 213 / 9e-63 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 213 / 7e-62 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 210 / 5e-60 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 210 / 7e-60 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 204 / 4e-58 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 196 / 1e-55 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041193 pacid=23179548 polypeptide=Lus10041193 locus=Lus10041193.g ID=Lus10041193.BGIv1.0 annot-version=v1.0 ATGTTGCCGTCAAAGCGAGCGGTGAAGCTTTTTCAAACCCTTTTGCCTTCCGCTAAGCCAAAGGTATGTTATTCGATTCCCAGGTCTTTGAGCTCCGCCT CCGAGTTACCCTTAACCCCAGAATCTGCCGACAATCCCGAGTCAGAGTCACCGGACATTCCCACTTGGCTCCGAGACTTCAATACCTCGGGAACCCAGGA CCCAGACGATGGTGATTTCATTATCCCTTCTCTTTACAGCTTGTTTGCCAAATCCTCTTCCGGGAATCACAAGCAGGTTGCTAGACGCTTACTATCCGGA CCAAATGATGCGGACATTGATAAAGTGAGCCAAGCTCTGAAAAAACGGTACCCGTCGCCGGATAGCGTCGTTGAAGCTTTGAATCAGTGTGGTGTTGTGC CGAGGCATGATTTGGTTGTGCATATATTGAAGAGGTTCAGCAACGACTGGATTCCGGCTTTGGGTGTCTTCATTTGGGCAAAACGTCGAACAGGTTATGT GCATACCCCGGAGATTTACAATTTCATGGTTGATGCTCTGGGGAAGTGCAAGAAGTTCACTTTGATGCGGGAATTGGTTGAGGAAATGAGGGGATTAGAA GGGTATGTGTCGTTGGTCACCATGACCAAGGTAATGCGGAGGTTTGCTAAATCTAGGGAGTATGAAAATGCTATCAAATCGTTCAGGGAAATAGAGAGAT TTGGTGTTACTAGAGATGTAGCAGCACTGAATGTATTGATGGATGCATTGGTTAAAGAGTGTAGCGTTGAGAATGCTTACAGCGTGTTTTTGGAGTTCAA GGATTCGATACCTCCGGATTCGAATAGCTTTCGAATTCTGATTCATGGCTATTGCAAGGCTAGGAAGCCTGAAGATGCAAGAAGAATCATGGAGGATATG AAGACACATGGGTTTCAACCTTGTGTTGTTTGCTACACTTGCTTCATCGAAGCTTACTGTAAGGAGAAAGATTTCCGAAATGTCGATGCTATCTTAGACG AGATGCAAGAGAAAGGCTGCGAGCCGAATGTTGTTTCATACACTATAATTATGCACGCACTTGGGAAAGCGAAACAAACGAACGAAGCGTTGGAGGTTTA CGAAAAAATGAAAAGGAAAGGATGTGTGCCCGATGCCTCGTTTTACGGGTCTTTGATATTCATCCTAAGCAGCTCTGGAAGGATTAAAGATGCTTGGGAT GTATTCCGGGATATGGAGAAGCAAGGTGTTAGTCCTAATTTGTTGGTGTACAACACCATGATTGGTTCCGCTTGTGCCCATTGGCAGGGCTCTGATGCTT TGGGATTGCTGCAGAAGATGGAGGAGAATTCTGTAAAGCCGGATATCAAGACTTATGCGCCATTGTTGAAGCTGTGCTGTAAGAAAAAGACGATGAGAGT GCTGAAACTTGTGATGAATCACATGTTTGAGAATGATGTCAGTGTCGATCTTGGAACGTATGAATTGATCGTGCGGGGGCTTTGTATGTCTGGGAAGCTC GAGGAGGCGTGTTTGTTTTTTGAAGAAGCTGTTTCAAAAGGAATGGTTCCTAGGGATAGTCTGTACAAGCAGCTGATGGAAGATCTTAAGCAACACAATA TGTTAGACGCTAAGGGAAAGATGGAGAAGTTGATGGAGAAGAGGAATGTGGTTGTTGAGGTGGGAGAGATGAGTGCTTGA
AA sequence Show only first row Show all	>Lus10041193 pacid=23179548 polypeptide=Lus10041193 locus=Lus10041193.g ID=Lus10041193.BGIv1.0 annot-version=v1.0 MLPSKRAVKLFQTLLPSAKPKVCYSIPRSLSSASELPLTPESADNPESESPDIPTWLRDFNTSGTQDPDDGDFIIPSLYSLFAKSSSGNHKQVARRLLSG PNDADIDKVSQALKKRYPSPDSVVEALNQCGVVPRHDLVVHILKRFSNDWIPALGVFIWAKRRTGYVHTPEIYNFMVDALGKCKKFTLMRELVEEMRGLE GYVSLVTMTKVMRRFAKSREYENAIKSFREIERFGVTRDVAALNVLMDALVKECSVENAYSVFLEFKDSIPPDSNSFRILIHGYCKARKPEDARRIMEDM KTHGFQPCVVCYTCFIEAYCKEKDFRNVDAILDEMQEKGCEPNVVSYTIIMHALGKAKQTNEALEVYEKMKRKGCVPDASFYGSLIFILSSSGRIKDAWD VFRDMEKQGVSPNLLVYNTMIGSACAHWQGSDALGLLQKMEENSVKPDIKTYAPLLKLCCKKKTMRVLKLVMNHMFENDVSVDLGTYELIVRGLCMSGKL EEACLFFEEAVSKGMVPRDSLYKQLMEDLKQHNMLDAKGKMEKLMEKRNVVVEVGEMSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22670			Pentatricopeptide repeat (PPR)...		Lus10041193 [exp]	0	1
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10014049 [exp]	1.0	0.9281
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10018109 [exp]	3.5	0.9153
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	6.0	0.9153
AT5G06550			unknown protein		Lus10029343 [exp]	6.2	0.9195
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	6.7	0.9141
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	9.9	0.9029
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	13.0	0.8917
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	14.3	0.8998
AT3G05980			unknown protein		Lus10002455 [exp]	14.7	0.8638
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	16.4	0.9129

Compare expression of checked genes

Lus10041193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.