Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085100 [exp] 95 / 1e-24 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041195 pacid=23179946 polypeptide=Lus10041195 locus=Lus10041195.g ID=Lus10041195.BGIv1.0 annot-version=v1.0 ATGTGTTCTACCAAAAAGAGTCCTTACAATATGGTACTGTCTTGTGTAATTCTCCATCTTCTAACTTCAACAGTGACTAGTTCACCAATCCAAGGCTGCT CAATCCAGGGGATGGACCTCGGACCGTGTTTGAAGCCCTCGAATGATCCCTTCTCGATCAACAGCTCGTGCTGCAAAGTTCTCAACAAGGCAGTGAAATC TGGGTACAACTGCTTGTGCTTGTTGCTGGGATCTTCAGTCGCTCCTGATTCAGCCTCGGCCATCTCTCTGCCTCTCTCCAATTGTCTCATTTCCTTCCCT CCATTGACTCACTGCCAAAGTGCGACTACGTTTCAGACAAACATGTCAAGTGACGCTCTTGAACCTTCATTTCCACTTTCAGCTGAATCTGGTCATCTGA CGGTAGGAAACGAGGCCGGATTTATCAAGATTTCTTTGCATCGATCTCTTGTGATGTCATTGGCACTTCAAGCTTACATTATGCTACTAGATTATCTCTT CTGA
AA sequence Show only first row Show all	>Lus10041195 pacid=23179946 polypeptide=Lus10041195 locus=Lus10041195.g ID=Lus10041195.BGIv1.0 annot-version=v1.0 MCSTKKSPYNMVLSCVILHLLTSTVTSSPIQGCSIQGMDLGPCLKPSNDPFSINSSCCKVLNKAVKSGYNCLCLLLGSSVAPDSASAISLPLSNCLISFP PLTHCQSATTFQTNMSSDALEPSFPLSAESGHLTVGNEAGFIKISLHRSLVMSLALQAYIMLLDYLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041195 [exp]	0	1
AT4G16640			Matrixin family protein (.1)		Lus10007478 [exp]	3.5	0.9181
AT4G16640			Matrixin family protein (.1)		Lus10028955 [exp]	3.5	0.9369
AT4G02830			unknown protein		Lus10014664 [exp]	3.6	0.9371
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10035271 [exp]	10.7	0.9193
					Lus10003493 [exp]	11.2	0.8868
					Lus10031407 [exp]	14.3	0.9109
AT2G14830			Regulator of Vps4 activity in ...		Lus10033703 [exp]	19.6	0.9168
AT5G67640			unknown protein		Lus10011552 [exp]	19.6	0.8987
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10041196 [exp]	21.9	0.9052
AT1G61240			Protein of unknown function (D...		Lus10018456 [exp]	24.8	0.8741

Compare expression of checked genes

Lus10041195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.