Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22590 502 / 6e-178 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021913 [exp] 675 / 0 AT3G22590 516 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10010571 [exp] 582 / 0 AT3G22590 526 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10039347 [exp] 317 / 1e-108 AT3G22590 295 / 2e-100 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10026680 [exp] 187 / 1e-57 AT3G22590 63 / 1e-11 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085500 [exp] 539 / 0 AT3G22590 555 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Potri.008G155000 [exp] 362 / 2e-125 AT3G22590 385 / 3e-134 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05179 [flax] [poplar] CDC73_C RNA pol II accessory factor, Cdc73 family, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10041198 pacid=23179854 polypeptide=Lus10041198 locus=Lus10041198.g ID=Lus10041198.BGIv1.0 annot-version=v1.0 ATGGATCCGCTTTCAGTCCTCCGTGAATACACCATGCGCGGGGACCTGGACAAGATCGTCAGAGTGAACAACGAGTTCCGATTCGGCTCCGACTACTCAT TCCCTTGCTCCGCCGAAACTGCATACCGATCCAACAAAGGAAACCTCTTCACATTGGAAACGCTCGTTTATTACATCCAGAACGCCCAGCTCAAGCACAC CGACTACTTCCAGAGCTGCCGCGCCCTCGGAATCCCAGCAATCACTTTCGTCGAGAGGAAGCCCCTTCTCGATTACTTGACCGGGAAGCTCTCCAACTCC GATGCCGTTGTCTTCCCGCCTCAGCCGCAGCTTCTTCAGCAAGAACAAAACCCTACTTTGGACAGAAATCTGGGTGGTCACGACTATTACCGTCCCGAGG AAGGAGCGCTTGTTGATTCCGTCAACGACGCCGTGTATACTGCCGGGAATGGTAAAGCGGAGGATTATCTTTCTCTGATCTACTCGACGGAGAAGCCGTT GAAGGATAGGGAGTCGTTGTTGGAGTGTAAGAACAAGGATTTCTACAGCGTGTTGGTGTCTTCTACTAAGAGGGAGGAGGAAAGGCAGAGGATTGAATCG CAGCAGAGGAAAGATGGATTGGTGTCGTCCAAGAGTAGATTGATGGGAGGTGATGACAGAGGAGGGGGTGGATATGGTGATGATATGCCGAAGCTCAGAG GGAAAACTGGGGAAGGGGTGCCTATCATTTTGGTGCCTAGCGCATTCCAGACGTTGATTACTATTTACAATGTGAAGGAGTTTCTGGAGGATGGAGTGTA CGTACCTACTGATGTGAAGGTGAAGCAAATGAAAGGGGCGAAGCCGGAGTGTGTGACCGTGCAGAAGAAGTTCAGTACTGATAGGAACAGGGTGATGACT GCGTATGAGGTTAGGGATAAACCTTCTTCTCTTAAGTCTGATGATTGGGACCGTGTTGTGGCTGTTTTCGTGTTGGGGAAGGAGTGGCAGTTCAAGGATT GGCCTTTCAAGGATCATCTGGAGATATTTAATAAGATTGTTGGATTCTTCGTGCGTTTTGAAGATGACAGCATTGAGTCTGCAAAAACTGTTAAGCAATG GAATGTAAAGATTATATCGATAAGCAAGAACAAACGACATCAAGACCGGACAGCTGCTTTGGAGGTGTGGAACAGACTAGAAGAATTTGTGCGATCCAGA TCACATTCTTGA
AA sequence Show only first row Show all	>Lus10041198 pacid=23179854 polypeptide=Lus10041198 locus=Lus10041198.g ID=Lus10041198.BGIv1.0 annot-version=v1.0 MDPLSVLREYTMRGDLDKIVRVNNEFRFGSDYSFPCSAETAYRSNKGNLFTLETLVYYIQNAQLKHTDYFQSCRALGIPAITFVERKPLLDYLTGKLSNS DAVVFPPQPQLLQQEQNPTLDRNLGGHDYYRPEEGALVDSVNDAVYTAGNGKAEDYLSLIYSTEKPLKDRESLLECKNKDFYSVLVSSTKREEERQRIES QQRKDGLVSSKSRLMGGDDRGGGGYGDDMPKLRGKTGEGVPIILVPSAFQTLITIYNVKEFLEDGVYVPTDVKVKQMKGAKPECVTVQKKFSTDRNRVMT AYEVRDKPSSLKSDDWDRVVAVFVLGKEWQFKDWPFKDHLEIFNKIVGFFVRFEDDSIESAKTVKQWNVKIISISKNKRHQDRTAALEVWNRLEEFVRSR SHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10041198 [exp]	0	1
AT5G11810			unknown protein		Lus10022300 [exp]	2.4	0.8889
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10042268 [exp]	2.6	0.8573
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009027 [exp]	4.6	0.8737
AT1G66080			unknown protein		Lus10010967 [exp]	5.5	0.8940
AT1G71780			unknown protein		Lus10016547 [exp]	6.3	0.8721
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10030080 [exp]	6.6	0.8365
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	10.0	0.8326
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009665 [exp]	10.2	0.8558
AT2G19270			unknown protein		Lus10015539 [exp]	11.2	0.8403
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10026839 [exp]	12.6	0.8467

Compare expression of checked genes

Lus10041198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.