Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05440 204 / 1e-62 C-8 sterol isomerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086100 [exp] 276 / 9e-91 AT1G05440 296 / 2e-98 C-8 sterol isomerases (.1) Potri.008G154400 [exp] 212 / 8e-66 AT1G05440 302 / 2e-100 C-8 sterol isomerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF04622 [flax] [poplar] ERG2_Sigma1R ERG2 and Sigma1 receptor like protein
Representative CDS sequence Show only first row Show all	>Lus10041200 pacid=23179891 polypeptide=Lus10041200 locus=Lus10041200.g ID=Lus10041200.BGIv1.0 annot-version=v1.0 ATGAATCCATCCGAATCCCCTTCGTCGGTGAAAGACAGCAGCTGTTACTATCCAGGCTGCAAAAAGAACGCCAATTGCGACTGCGACATCTGCTTAGCCA GCATCAACGCCACTCTCGACCTCATTCCTTTCCCCACCACCCGTACATCCTCCTTCCCCAAGAAACTCTCCTCCTCTCGCCTCAAATTCGATTCGAGCAG CAACAGCAGCAGCATCACTCCGCTTTCATTCGACCCTTCTTTAATCTCCACTCCAATCTCCACTGCGATCTCCACTTCTCGCCCATCAATTGAGACTCCA GCACTCAAATCCACTTCCAGAGCGTTGAATTTGAACCACACGAAGAAGGAAAAGAACAAGGAGAAGGAAAGGAACCAAATTTACGCTTCAGCTTCACGAG GGAATCTCATTCTCCTGAAATTCGGAGTTATCGGTTTCATCTTGATTTTAGCGGCAGAGGAGGCGGTGCTCTCCTCCATGCCGGTTCAGCCGACTTTACA ACCTGTCTTTACCGCGGATTCAGTAATGGCGGCTGGCGAGAGATCCTGGATCGTGAAAGGAGATTTAGCCGGAAGAGTAATGTTGGTGCAGAACCAGTTG AGAGCTTTTGCGCCTCATTTAAAGGTTTCGAATTGCAGCTACAAGGATTCCGTCTGGCAAATCAATCAGGATGGTTTACTTTTGAGATCTGAATGTGTGT TGTACAAATCTGGAACAGAGGAGGTAAAGATTTGGGGATGGCCTTTCCAAACTGCGGGATTGATCAAAGCAGGATTTTCATCCCGTTCCTTCACTGTTCT ATCAGGCAGACTGACTGAGTGGGGTGATGGCAAGATTGGATATGAGGTTCGGAGAGTAAACACTTCATGGGTTCAGCAGAAATGGAAGGCCTCTGCGGTT CAAATGGATCCCAACACCTGGGTTTTGGAATACAGTCGCAGTTGGATGGTTGATAAGCCTAGACTATTTTGGGGTTTGGCAGAGCTGGTGAAAACCAGAG TTTCGAGGTTGTCGGAAAGAACAAGCAGAGTAGTACTGTGTTCATTTTCTGCATTGAAGAGAAATCGGCAGACAATGATCAAGCCTACCTAA
AA sequence Show only first row Show all	>Lus10041200 pacid=23179891 polypeptide=Lus10041200 locus=Lus10041200.g ID=Lus10041200.BGIv1.0 annot-version=v1.0 MNPSESPSSVKDSSCYYPGCKKNANCDCDICLASINATLDLIPFPTTRTSSFPKKLSSSRLKFDSSSNSSSITPLSFDPSLISTPISTAISTSRPSIETP ALKSTSRALNLNHTKKEKNKEKERNQIYASASRGNLILLKFGVIGFILILAAEEAVLSSMPVQPTLQPVFTADSVMAAGERSWIVKGDLAGRVMLVQNQL RAFAPHLKVSNCSYKDSVWQINQDGLLLRSECVLYKSGTEEVKIWGWPFQTAGLIKAGFSSRSFTVLSGRLTEWGDGKIGYEVRRVNTSWVQQKWKASAV QMDPNTWVLEYSRSWMVDKPRLFWGLAELVKTRVSRLSERTSRVVLCSFSALKRNRQTMIKPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05440			C-8 sterol isomerases (.1)		Lus10041200 [exp]	0	1
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	2.8	0.9560
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	5.7	0.9341
AT3G12870			unknown protein		Lus10031776 [exp]	6.0	0.9403
AT5G37010			unknown protein		Lus10020782 [exp]	6.5	0.9321
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10040514 [exp]	10.4	0.9261
AT1G49870			unknown protein		Lus10002116 [exp]	10.8	0.9343
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	13.2	0.9332
AT5G56120			unknown protein		Lus10027112 [exp]	13.5	0.9120
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	14.5	0.9232
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	16.1	0.9320

Compare expression of checked genes

Lus10041200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.