Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05410 325 / 5e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G22520 105 / 3e-24 unknown protein AT4G14840 94 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021915 [exp] 504 / 6e-177 AT1G05410 390 / 7e-132 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10010550 [exp] 377 / 7e-127 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10004900 [exp] 199 / 1e-59 AT1G05410 207 / 6e-63 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041202 [exp] 103 / 2e-23 AT3G22520 327 / 1e-104 unknown protein Lus10010551 [exp] 100 / 5e-22 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006124 [exp] 99 / 1e-21 AT3G22520 340 / 4e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086600 [exp] 381 / 2e-128 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G086700 [exp] 118 / 2e-28 AT3G22520 320 / 5e-102 unknown protein Potri.008G153800 [exp] 114 / 3e-27 AT4G14840 329 / 7e-106 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041201 pacid=23179954 polypeptide=Lus10041201 locus=Lus10041201.g ID=Lus10041201.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAACCAAACAAAACTGAGGAAAGCAATGGATGTAGTACTCGTAAGGAAATCCCTTTCCGTCTAAGGGTAGTTCCAGGTTATGAGTCTGGCG AAGGTTGGCCTTATGCTCCTGAGAATTGGCCAAATCCTGGAGACACGTGGGGTTGGAAAGCGGGGAACCGCCGGAGTTTCTCTGGGTATCACGTGGATAG ATTTCTGTTCCTCCCGAAAAGCCTCCACCATCTTCCTTCTGTTTCGAGTCGTGTAAAGAACGGTTTCGCGAGCAAGCTCATGGTGCAGACGTTCATTGAA AAGCATTTCCCTGGTGCGGATATCAAGGCCTTCTTTGCTTCATTTGTCTGGAGGATCCCTTCTCACCATGCCTCCATGACAATTTTTTCAATGTGTTCTA AGATGAATGGTTGTCAATCTAGCCAAAAGACTGTAAGCTTGTTACATGTGAACCAAAAGCAGTGCCTTGTTTTTCTTCCATGTAGGAATGATATGATGCC TTTGATCTTCATTGGAGGACTTAAGAACAGGAGTGCTTCTACAGAAGACCTTGATAGTAGTCCCTTCCATGTGCTTCCTGCAGTCACTGCCGTAGTAACT GAAGGCTGCTTCTGTACTCATGTAGCACACCTTGAATGTGCTCTGAGGATTTACATGGCAGGAACAGTTGGAGGAAGCATCGGTCTTGATGCTGAGTACT TTTGCCGACGTTGTGATGCAAAGACCGATCTTGTTCCACATGCTCTGAAGCTTTTACAAACTTGCAAGTCGATGGATTCCAAAGAGGAAATACAGAAACT TCTAAATCTTGGCATCTGTATTTTGCGTGGAACTAGGAGAAACAATGCCGGGAATTTGCTGAAACGCATCGAAACAGCTGCAACAAGGCTCAAGCATTGT ACTACCCTTGAAGATGTATGGAAAGTTGATGAAGAAGAAGCACCAGCTATTTGCTATGATTTGGCGTCCAAGTCTCCTGATTACAGTGCTGAAATTCTGG CACTTGATTCCGAGATCGACGGTGTGCTCCATGCACTAAGAGATGCTCAGGAACTTGAATACAAGACTGCAGAGGAACAGCTTGTTCGGCAGAAGAAATA TGTGCAAAATCTCTACCAACAACTTGAGAAAGAGCATGCTGAACTAGCAAACCTGAAATCAGAGAAGATGGGAGAAGGATTGTTGAGTACAGTGACTTGC AGGATTGATCAGATAAATTGGGAGAGGAAGAAGCTGAGGCGTATGGGAAAGGTGGCCAACGGTTTTGGAAGGACCTCCAAAGCTATTATGAGGGAATTTT TCGGCTTTGAATTTGAGAAAAAACCTAGGAAAAGGGAGGACCCTGTGGCGCAATTGTGA
AA sequence Show only first row Show all	>Lus10041201 pacid=23179954 polypeptide=Lus10041201 locus=Lus10041201.g ID=Lus10041201.BGIv1.0 annot-version=v1.0 MGKKPNKTEESNGCSTRKEIPFRLRVVPGYESGEGWPYAPENWPNPGDTWGWKAGNRRSFSGYHVDRFLFLPKSLHHLPSVSSRVKNGFASKLMVQTFIE KHFPGADIKAFFASFVWRIPSHHASMTIFSMCSKMNGCQSSQKTVSLLHVNQKQCLVFLPCRNDMMPLIFIGGLKNRSASTEDLDSSPFHVLPAVTAVVT EGCFCTHVAHLECALRIYMAGTVGGSIGLDAEYFCRRCDAKTDLVPHALKLLQTCKSMDSKEEIQKLLNLGICILRGTRRNNAGNLLKRIETAATRLKHC TTLEDVWKVDEEEAPAICYDLASKSPDYSAEILALDSEIDGVLHALRDAQELEYKTAEEQLVRQKKYVQNLYQQLEKEHAELANLKSEKMGEGLLSTVTC RIDQINWERKKLRRMGKVANGFGRTSKAIMREFFGFEFEKKPRKREDPVAQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	0	1
AT5G45360			F-box family protein (.1)		Lus10022369 [exp]	1.4	0.9505
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	2.0	0.9570
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	3.2	0.9475
AT4G12760			unknown protein		Lus10001181 [exp]	3.7	0.9429
AT1G21370			unknown protein		Lus10042793 [exp]	4.0	0.9414
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	4.0	0.9504
AT5G48340			unknown protein		Lus10036410 [exp]	5.5	0.9350
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	5.7	0.9229
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	5.7	0.9505
AT3G12300			unknown protein		Lus10005383 [exp]	7.7	0.9383

Compare expression of checked genes

Lus10041201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.