Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22520 321 / 3e-102 unknown protein AT4G14840 303 / 6e-96 unknown protein AT1G05410 112 / 3e-26 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006124 [exp] 587 / 0 AT3G22520 340 / 4e-106 unknown protein Lus10010551 [exp] 580 / 0 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000233 [exp] 418 / 2e-145 AT3G22520 215 / 1e-66 unknown protein Lus10021916 [exp] 249 / 1e-80 AT3G22520 129 / 5e-36 unknown protein Lus10021915 [exp] 106 / 3e-24 AT1G05410 390 / 7e-132 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041201 [exp] 103 / 2e-23 AT1G05410 325 / 4e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10010550 [exp] 84 / 5e-17 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153800 [exp] 410 / 5e-137 AT4G14840 329 / 7e-106 unknown protein Potri.010G086700 [exp] 400 / 2e-133 AT3G22520 320 / 5e-102 unknown protein Potri.010G086600 [exp] 116 / 1e-27 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041202 pacid=23179540 polypeptide=Lus10041202 locus=Lus10041202.g ID=Lus10041202.BGIv1.0 annot-version=v1.0 ATGTCGGGCCACTTCATCGCTCCATGGGATTTACAACAGGAGCCCGTCGACGAATGCTATGGTCAGCCATCTTATGGTCACCAGAATAAGCAAATTGCGG GGAGTAATAATCCATTTGCTAGAAATGGTGTGCATGAAGAGGATGATAAGAAAATAACGGTGAATGGATTTGTGCCTGAAGAAGATGATAAGAAAGTAAC TGTCAATGGACTTATTGATAACGTGGTTAATCAGTTGAACGGCGGTGATGTCGTGAACGACAATGAGAACAATGAGCATGGTAGTAGTCCCCGTCCGGGT GATCAGTTGGGTGAGCTTAGGCTTGTGAGGGCTAGTGAATCAGGTGAAGGCGTTCCATATGCTCCTGCCAATTGGCCGAATCCAGGTGACAATTGGACAT GGAAGGTAGGGAGGCGGATCACAAGTCACGGAGTGTTCCAGGATAGGGCTTTGTATCCTCCGAAACATTTCCCAAGAGTAGCGGGACTAAAATTTCCGTT TCCGAGCAAGACAGCTGTTATCACTTACATCAAGACGGTCTTTCCAGATGCTAATCTTGATGCATTTTTCTCCTCGTTTTCTTGGAAGATCCCTGCAAAG ATGGACTCCCCTTTCAAAGTAGAAGCCATCTCAATTTCTTCCCCAAGGTCATTGCACGGCACAAATGAGGAAGGTCAAGTGGAAGGAGAAGCTTCTCGTT TGCGGAAAAGAAAGCCAAAAGCACATACTCCACCATCCTCACTCTCACCATCTTCACCAAGGCAAAAATGGCACCGCAGTGCTGCAAAATCATCCACACC GAAGCAGAGAACAAATGAGAAAAACGTGGCTTCCTCATCAACTATAACAAAGCGGAGAACCGCCAGAGTAGAGGGAAAACAAACCGTTCCTTTTGGCGAG GAAGATAACGGTAACACTAACAACACTCAGGAGGTGGAGTTCAACATCGAAATCCCAGCGGACTTTGACAACTATCTTGATTCTCTACAGGACATCATCT CTCAGCCCTTGTCCGAGTCTGTTACTTCTCAGGGTACAATTATAGAGTCTCTTGCAGCAGATGGCGAAATGGCTGAATCTCGCAATAGGCTTTCTTCCTT ACTCGTTATGGACTTCCCTGCACTGGTTTTGTCAAGAAATTTCTCCGAACTTGCACCTCTAGCGACAAAACTTCTGACCGATCCTCGCCTGACTGCCGAA CATACTGTCAAACTGAAGCTGATTGAAGAGATTCCGTCTTTTAGAGACGTTTTTCTACAGAGTAGGGAGATAATAGACCAAGTTGACAGGGAGTTCGCCA TGCTTGAGTCGAACAAATCCAAGGTGGCTACTCTCAAGAGCGAGTATAGCGAACTGAAGGAGAAAACGGACCAACTTCAGGGTCAGATAGATGCAAACTT GTCGACCGTAGAAGAAATTGATAAGGAAATCGCCAGACTTCAAGCGCGCAGAGCTGAGCTGATCCGTGCAGTTGAGTCGAACAAAGCTGCTAAGGTGGAG GTGAACTATGCTCAGAAAATGGTGGCGAATGCTATTCCGAATGTAGTGCATGAGATTCAGAATTCCAACTCGAAGATCCCTGAATGGGATTTGACGAGGA GCAATGCAGTGAAGCGGGAAGCTGAGATTCGTTCCAAGTTTGCACCTTTGCAAGGGTTCTCGCTTATTCCACCGCCCTTTCAGGGATTATTCCTTTAG
AA sequence Show only first row Show all	>Lus10041202 pacid=23179540 polypeptide=Lus10041202 locus=Lus10041202.g ID=Lus10041202.BGIv1.0 annot-version=v1.0 MSGHFIAPWDLQQEPVDECYGQPSYGHQNKQIAGSNNPFARNGVHEEDDKKITVNGFVPEEDDKKVTVNGLIDNVVNQLNGGDVVNDNENNEHGSSPRPG DQLGELRLVRASESGEGVPYAPANWPNPGDNWTWKVGRRITSHGVFQDRALYPPKHFPRVAGLKFPFPSKTAVITYIKTVFPDANLDAFFSSFSWKIPAK MDSPFKVEAISISSPRSLHGTNEEGQVEGEASRLRKRKPKAHTPPSSLSPSSPRQKWHRSAAKSSTPKQRTNEKNVASSSTITKRRTARVEGKQTVPFGE EDNGNTNNTQEVEFNIEIPADFDNYLDSLQDIISQPLSESVTSQGTIIESLAADGEMAESRNRLSSLLVMDFPALVLSRNFSELAPLATKLLTDPRLTAE HTVKLKLIEEIPSFRDVFLQSREIIDQVDREFAMLESNKSKVATLKSEYSELKEKTDQLQGQIDANLSTVEEIDKEIARLQARRAELIRAVESNKAAKVE VNYAQKMVANAIPNVVHEIQNSNSKIPEWDLTRSNAVKREAEIRSKFAPLQGFSLIPPPFQGLFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22520			unknown protein		Lus10041202 [exp]	0	1
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	2.0	0.9444
AT3G53440			Homeodomain-like superfamily p...		Lus10039632 [exp]	2.4	0.9281
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	3.5	0.9201
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	6.5	0.9351
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	7.2	0.9088
AT1G31040			PLATZ transcription factor fam...		Lus10036226 [exp]	7.3	0.8950
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	7.3	0.9024
AT3G52110			unknown protein		Lus10029522 [exp]	7.7	0.9046
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10033131 [exp]	8.3	0.8968
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	8.9	0.9281

Compare expression of checked genes

Lus10041202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.