Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 186 / 4e-57 unknown protein AT5G23570 52 / 2e-08 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) AT4G01180 42 / 8e-05 XH/XS domain-containing protein (.1) AT5G59390 41 / 0.0002 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021917 [exp] 237 / 2e-81 AT3G22430 125 / 2e-34 unknown protein Lus10021918 [exp] 78 / 2e-17 AT3G22430 298 / 6e-97 unknown protein Lus10020567 [exp] 72 / 2e-15 AT3G22430 129 / 8e-33 unknown protein Lus10004302 [exp] 72 / 4e-15 AT5G23570 517 / 4e-180 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10006278 [exp] 64 / 2e-12 AT3G22430 132 / 2e-32 unknown protein Lus10019214 [exp] 56 / 2e-09 AT5G23570 515 / 2e-179 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10011024 [exp] 52 / 4e-08 AT5G41150 1233 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2) Lus10000949 [exp] 47 / 1e-06 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 46 / 4e-06 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152900 [exp] 211 / 7e-67 AT3G22430 409 / 2e-138 unknown protein Potri.010G087400 [exp] 209 / 3e-66 AT3G22430 418 / 3e-142 unknown protein Potri.010G235700 [exp] 79 / 1e-17 AT3G22430 125 / 4e-30 unknown protein Potri.009G147201 [exp] 71 / 8e-15 AT3G22430 148 / 3e-37 unknown protein Potri.T045700 [exp] 70 / 2e-14 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.018G137400 [exp] 70 / 2e-14 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 68 / 9e-14 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.008G024500 [exp] 66 / 3e-13 AT3G22430 127 / 1e-30 unknown protein Potri.003G187800 [exp] 57 / 7e-10 AT5G23570 226 / 4e-67 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188350 [exp] 56 / 2e-09 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10041203 pacid=23179586 polypeptide=Lus10041203 locus=Lus10041203.g ID=Lus10041203.BGIv1.0 annot-version=v1.0 ATGATCTGGCCACCTGTGGTGATTATTCATAACACCGCTACAGGAAAGAGTAAGGAGGGACGCATAGAAGGTTTGGGAAACAAAGCTATGGATAGCAAAA TAAGAGCTCTTGGATTCCCAGGAGGCAAGTCGAAATCACTGTATGGTAGAGAAGGGCATCAAGGAACAACTCATGTAAAGTTTGCGGGCGACACGCCTGG CCTAAGAGAAGCTGTGGGGCTGTCAGATCATTTTGCGAAACAAAATCGCGGACGAAATGCATGGGAACGTGTACAAGCAGCAACGGGAGGGAAAAGCGAC GATAGGAATCCAGACCTTGTGAAGTTGGATCGCAGCGGGGATAAAACGAAGGTTCTCTACGGTTACCTTGCCACAGCTGCTGATCTTCCCAGGTTTGATT TCGATACGAAGAAGAAGCTCACACTTGAGAGTGTGCGAGAGTATGAAGGATTCCAAGTTGGTCGTCCTCCCAGATAA
AA sequence Show only first row Show all	>Lus10041203 pacid=23179586 polypeptide=Lus10041203 locus=Lus10041203.g ID=Lus10041203.BGIv1.0 annot-version=v1.0 MIWPPVVIIHNTATGKSKEGRIEGLGNKAMDSKIRALGFPGGKSKSLYGREGHQGTTHVKFAGDTPGLREAVGLSDHFAKQNRGRNAWERVQAATGGKSD DRNPDLVKLDRSGDKTKVLYGYLATAADLPRFDFDTKKKLTLESVREYEGFQVGRPPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22430			unknown protein		Lus10041203 [exp]	0	1
AT1G57790			F-box family protein (.1)		Lus10022706 [exp]	8.5	0.8649
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10022931 [exp]	8.7	0.8880
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	9.2	0.8815
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	9.5	0.8906
AT5G64816			unknown protein		Lus10009081 [exp]	14.8	0.8635
AT4G33690			unknown protein		Lus10040497 [exp]	15.2	0.8894
AT5G60340			P-loop containing nucleoside t...		Lus10040792 [exp]	25.8	0.8183
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	27.0	0.8644
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	34.7	0.8609
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	39.3	0.8675

Compare expression of checked genes

Lus10041203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.