Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 95 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021918 [exp] 344 / 5e-118 AT3G22430 298 / 6e-97 unknown protein Lus10041205 [exp] 320 / 3e-109 AT3G22430 149 / 2e-40 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087400 [exp] 107 / 4e-26 AT3G22430 418 / 3e-142 unknown protein Potri.008G152900 [exp] 90 / 5e-20 AT3G22430 409 / 2e-138 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041204 pacid=23179714 polypeptide=Lus10041204 locus=Lus10041204.g ID=Lus10041204.BGIv1.0 annot-version=v1.0 ATGGCTAGCAGCAGCTCCCAGCTCAAATCCTCTTCCTTCAAGCCTTCCTCCTCCGCTTCCGCGTCGCATCGCAAATCTCGTTGGGAATCCTCCTCTTCCG CCGCTAACGCCAATAATCAGCCGTCGGGATCAAAATCCAACCAGACTAAGCCCACCAAACCTCATCCCAATTCAAAGCCCTCGCCGAAGCTCAATAAAGG GCCATCCCCAAAACCCGCCGCAGCTCCTGACGCCCTTGCTCCGCCGTCGGGTGCCGCGTTCCCGTTTCCCGATTTCGGTCCTCCTCCTACTCCCACCTAT GGCTTTCACATGCTGGAGAGGCGGTCCATCGTCCTAGCAGACGGCAGCGTTCGCTCCTACTTCGCTCTTCCTCCGGATTACCAGAACCTACCTCCTCCAC GTTTCATTCCCCCGGGTCATGTACCGTCCGGTGGAGGTATGAGGTTCCCGCCGATGAGTCCTGAAGGATTAGGTTTTCGTGATGGTAATCAAATTCGAGA TCAGAATCACGGAGCTGCTATGAAGCGGAAGCATCCTGGAGGAGTTGAGGAGGAGTTCAAGTACGGAAACAGCAACCCTAACGGATTTCACTCAGCTGGA GCGGGGCGGAGTAGTCCATTTAGGAGAATCGATGACTTGAGGCCAGGGAAGTATATGAGGATTGGTGGTGACAGCGCGGGAGTGATCCATAAGCACCTTC AAGTTGACCCGAGCAAGCTAAAGAAAGCTTTTCTGCACTTTGCCAAGTTAATTAATGAGACTGAAGCTGAGAGAAGGCGTTATTTAGAGAACGGCAAGCA TGCACGGCTACCTTGTGTCGCTTGTAACTGGTTTGTTCTCATTATTCTCTTTTTCCCGTTCTCGCTGCTGATTCTACGCTAA
AA sequence Show only first row Show all	>Lus10041204 pacid=23179714 polypeptide=Lus10041204 locus=Lus10041204.g ID=Lus10041204.BGIv1.0 annot-version=v1.0 MASSSSQLKSSSFKPSSSASASHRKSRWESSSSAANANNQPSGSKSNQTKPTKPHPNSKPSPKLNKGPSPKPAAAPDALAPPSGAAFPFPDFGPPPTPTY GFHMLERRSIVLADGSVRSYFALPPDYQNLPPPRFIPPGHVPSGGGMRFPPMSPEGLGFRDGNQIRDQNHGAAMKRKHPGGVEEEFKYGNSNPNGFHSAG AGRSSPFRRIDDLRPGKYMRIGGDSAGVIHKHLQVDPSKLKKAFLHFAKLINETEAERRRYLENGKHARLPCVACNWFVLIILFFPFSLLILR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22430			unknown protein		Lus10041204 [exp]	0	1
AT3G22430			unknown protein		Lus10041205 [exp]	1.0	0.8901
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	2.4	0.8873
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	3.5	0.8686
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	5.5	0.8309
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033641 [exp]	7.7	0.7789
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	8.5	0.8397
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	10.4	0.7480
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	17.3	0.8006
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	19.7	0.7543
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	20.6	0.8284

Compare expression of checked genes

Lus10041204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.