Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 95 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041204 [exp] 321 / 2e-109 AT3G22430 147 / 2e-40 unknown protein Lus10021918 [exp] 311 / 3e-104 AT3G22430 298 / 6e-97 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087400 [exp] 100 / 2e-23 AT3G22430 418 / 3e-142 unknown protein Potri.008G152900 [exp] 92 / 2e-20 AT3G22430 409 / 2e-138 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041205 pacid=23179737 polypeptide=Lus10041205 locus=Lus10041205.g ID=Lus10041205.BGIv1.0 annot-version=v1.0 ATGGCTAGCAGCAGCTCCCAGCTCAAATCCTCTTCCCTGAAGCCTTCCTCATCCGCTTCAGCGTCGCATCGGAAATCTCGTTGGGAATCCTCCTCTTCCG CCGCTAACGCCAATAATCAGCCGTCGGGATCAAAATCCAACCAGACTAAGCCCACCAAACCTCATCCCAATTCAAAGCCCTCGCCGAAGCTCAATAAAGG GCCATCCCCAAAACCCGCCGCAGCTCCTGACGCCCTTGCTCCGCCGTCGGGTGCCGCGTTCCCGTTTCCCGATTTCGGTCCTCCTCCTGCTCCCACCTAT GGCTTTCACATGCTTGAGAGGCGGTCCATCGTCCTAGCAGACGGCAGCGTTCGCTCCTACTTCGCTCTTCCTCCGGATTACCAGAACCTCCCCCCTCCAC GTTTCATTCCCCCGGGTCCGTCCGGTGGTGGTATGAGGTTCCCGCCGATGAGTCCTGAAGGATTAGGTTTTCGTGATGGTAATCAAATTCGAGATCAGAA TCACGGAGCTGCTATGAAGCGGAAGCATCCTGGAGGAGTTGAGGAGGAGTTCAAGTACGGAAACAGCAACCCTAACGGATTTCACTCAGCTGGAGCGGGG CGGAGTAGTCCATTTAGGAGAATCGATGACTTGAGGCCAGGGAAGTATATGAGGATTGGTGGTGACAACGCGGGAGTGATCCATAAGCACCTTCAAGTTG ACCCGAGCAAGCTAAAGAAAGCTTTTCTGCACTTTGCCAAGTTAATTAATGAGACTGAAGCTGAGAGAAGGCGTTATTTAGAGAACGGCAAGCATGCACG GCTACCTTGTGTCGCTTATAACTACACAACGTCACAACCTAAGGGCATCAGGAAGGATTATCTGTTCCCAGTTCTTTCGTTCACTACTATAGCTTTGTTT GTGCTTATGGCTGGGAAAGACAGGACAGGAGTTCCTGGCTACCGTAGTTGTTCAAAACATCACTTTTCGGTCCTACGTGTTTCTGAGGAAGGAACAGTAT GTTTTTATACCGTAGCTTCATTCTTTGACAATCTATGA
AA sequence Show only first row Show all	>Lus10041205 pacid=23179737 polypeptide=Lus10041205 locus=Lus10041205.g ID=Lus10041205.BGIv1.0 annot-version=v1.0 MASSSSQLKSSSLKPSSSASASHRKSRWESSSSAANANNQPSGSKSNQTKPTKPHPNSKPSPKLNKGPSPKPAAAPDALAPPSGAAFPFPDFGPPPAPTY GFHMLERRSIVLADGSVRSYFALPPDYQNLPPPRFIPPGPSGGGMRFPPMSPEGLGFRDGNQIRDQNHGAAMKRKHPGGVEEEFKYGNSNPNGFHSAGAG RSSPFRRIDDLRPGKYMRIGGDNAGVIHKHLQVDPSKLKKAFLHFAKLINETEAERRRYLENGKHARLPCVAYNYTTSQPKGIRKDYLFPVLSFTTIALF VLMAGKDRTGVPGYRSCSKHHFSVLRVSEEGTVCFYTVASFFDNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22430			unknown protein		Lus10041205 [exp]	0	1
AT3G22430			unknown protein		Lus10041204 [exp]	1.0	0.8901
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	4.5	0.8771
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	4.9	0.8849
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	4.9	0.8783
AT5G44150			unknown protein		Lus10018632 [exp]	4.9	0.8540
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	6.7	0.8599
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	7.5	0.8704
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	8.0	0.8468
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	8.3	0.8817
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	9.5	0.8583

Compare expression of checked genes

Lus10041205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.