Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05370 530 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 475 / 5e-167 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75170 97 / 1e-22 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G22180 96 / 1e-21 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 94 / 4e-21 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36640 77 / 2e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 76 / 2e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 70 / 4e-13 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G55840 58 / 5e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G14820 56 / 1e-08 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021919 [exp] 838 / 0 AT1G05370 522 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10033464 [exp] 87 / 2e-18 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 85 / 2e-18 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 84 / 4e-18 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10020911 [exp] 85 / 8e-18 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10022428 [exp] 83 / 9e-18 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 80 / 2e-16 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10026020 [exp] 77 / 4e-15 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 75 / 6e-15 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G088300 [exp] 671 / 0 AT1G05370 520 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.008G152100 [exp] 663 / 0 AT1G05370 499 / 2e-176 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G068700 [exp] 91 / 7e-20 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 88 / 4e-19 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 88 / 1e-18 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G162100 [exp] 82 / 2e-17 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.002G261000 [exp] 82 / 4e-17 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.017G063966 [exp] 78 / 7e-16 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 76 / 1e-15 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G123200 [exp] 76 / 6e-15 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10041206 pacid=23179860 polypeptide=Lus10041206 locus=Lus10041206.g ID=Lus10041206.BGIv1.0 annot-version=v1.0 ATGGGCAAGCAGCAGCAGCCTAACCCGTCACCACCGCCACCTCAGACACCCGGCGGCGGAGAGAAAGTTGAAGCAGTTCTACAACTCCTCCGAAAGCAAT CTCAGCTCACTCTTAAACAGGAGAAATACTGTAGCAAGAGCTGTGTGGAAAGGTTTCTCAGAGCCAAAGGGGATAATGTCAAGAAGGCTGCCAAGTCATT ACGGGCTTGTCTTGCTTGGAGGCATTCCATCTCCATTGAGCATCTCATAGCAGACGAGTTTTCGGCTGAGCTGGCGGAAGGTGCTGCTTACGTGGCCGGC CACGACGACGAATCCAAGCCCGTTGTGATGTTCCGCATTAAGCAGGACTATCACAAGTTCCGTTCCCAGAAACTATTCACTCGTTTCATGGTGTTCACCC TCGAGGTAGCAATTAGCAGCATGGCCAAGAACGTTGAACAATTTGTGCTCCTCTTTGACGCAAGCTTTTTCAGATCAGGATCTGCTTTCATGAATTTATT GCTCCCAACACTGAAAATTGTGGCCGAGTATTATCCCAGCAGGCTTCACTCTGCTTTTGTCATCGACCCACCTTCTCTTTTCTCTTACCTTTGGAAGGGC GTCCGTCCATTTGTGGAGCTATCAACGGCTACAACAGTGGTATCGTCTCTGGACTTCGAAGAATCTCTGGAGTTTAACGACTTCACCTCCTACCCTCGCG CTGCGTCCCTGCGGTTCGATCCGTCGTCAATTAAATCGACGGCGAAGATCAGCTCATGCGCCTCTTCTCGCTTTTCCTTCACCGTATCCCACCATTTTGA CTCCGTCAAGCCGTGGTACCTCTCTCTTGGCGACACATCAACTTCCAAAGTTGGGCCCACCAAATTAGACAGCCACTCGTCGTCTTTGGGCCCAGCCCTG ATCTCCCAGCTTAACGCCCGGTCTTACTCGTTTGCGTCGCCAATTGCCCGGACGCCGCCGGGGAGCATTGGCGGCAGCAACCACTACGGTTACTCCGGCG CCGCTGCACGGACGGCGAAGAAAGGGTTCTTCCCTTCGACGCCGATGCCGCAGCGGGTAACTAGCGCTGCCGACGCCGTGAAGGTCTGTCACCCGCGGAC CCCACGCCCTTCGTTCCTACAGTCGCCGGCGTTGTTCTTCAAGAGGGACTGCCACGTCAGCGGCGGCAACAAGGCCGAGCGGTCCAGGGAATCGTTCCTC CCATTTTTGAAGTTCTACAGAAGGCCGTACGACGAGATGGTTTACAGGGCAAAGATGCGGCCGCCGCTCGGTGGACTGATCTCAATCGTCTCCCCGCAAA TTAGGAGGCGCCACGTGTCGGTATCCCAACGGTTCTAG
AA sequence Show only first row Show all	>Lus10041206 pacid=23179860 polypeptide=Lus10041206 locus=Lus10041206.g ID=Lus10041206.BGIv1.0 annot-version=v1.0 MGKQQQPNPSPPPPQTPGGGEKVEAVLQLLRKQSQLTLKQEKYCSKSCVERFLRAKGDNVKKAAKSLRACLAWRHSISIEHLIADEFSAELAEGAAYVAG HDDESKPVVMFRIKQDYHKFRSQKLFTRFMVFTLEVAISSMAKNVEQFVLLFDASFFRSGSAFMNLLLPTLKIVAEYYPSRLHSAFVIDPPSLFSYLWKG VRPFVELSTATTVVSSLDFEESLEFNDFTSYPRAASLRFDPSSIKSTAKISSCASSRFSFTVSHHFDSVKPWYLSLGDTSTSKVGPTKLDSHSSSLGPAL ISQLNARSYSFASPIARTPPGSIGGSNHYGYSGAAARTAKKGFFPSTPMPQRVTSAADAVKVCHPRTPRPSFLQSPALFFKRDCHVSGGNKAERSRESFL PFLKFYRRPYDEMVYRAKMRPPLGGLISIVSPQIRRRHVSVSQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	0	1
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	4.0	0.8355
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	4.1	0.8585
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	5.9	0.8111
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	6.9	0.8162
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	7.5	0.8469
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	12.5	0.7979
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	12.7	0.7988
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	12.8	0.8185
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	13.0	0.8368
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10008651 [exp]	13.3	0.7536

Compare expression of checked genes

Lus10041206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.