Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14940 368 / 2e-121 ATAO1 amine oxidase 1 (.1) AT1G31690 317 / 2e-101 Copper amine oxidase family protein (.1) AT1G31710 296 / 2e-93 Copper amine oxidase family protein (.1) AT1G31670 278 / 5e-86 Copper amine oxidase family protein (.1) AT4G12290 254 / 5e-77 Copper amine oxidase family protein (.1) AT1G62810 227 / 7e-67 Copper amine oxidase family protein (.1) AT4G12280 196 / 4e-59 copper amine oxidase family protein (.1) AT3G43670 205 / 7e-59 Copper amine oxidase family protein (.1) AT2G42490 85 / 3e-17 Copper amine oxidase family protein (.1) AT4G12270 64 / 1e-10 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021922 [exp] 470 / 7e-161 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10004912 [exp] 306 / 4e-97 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 299 / 2e-94 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 289 / 1e-93 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10010540 [exp] 295 / 8e-93 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 285 / 6e-89 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10024571 [exp] 239 / 3e-71 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 238 / 7e-71 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 236 / 2e-69 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G088900 [exp] 424 / 7e-143 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.008G151900 [exp] 318 / 8e-102 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 318 / 1e-101 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 317 / 1e-101 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118300 [exp] 273 / 3e-84 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 257 / 5e-78 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 81 / 6e-16 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 81 / 7e-16 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 79 / 3e-15 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10041208 pacid=23179804 polypeptide=Lus10041208 locus=Lus10041208.g ID=Lus10041208.BGIv1.0 annot-version=v1.0 ATGACTAATCCTCTGTTCCAAGTTGTTGCTTTAGCTATTCTCCTTTCTTGTTCCTTCCCACTTAGCCATTCTCATCCTCTGGACCCTCTCAGCCTAACAG AAATCAACCACCTCAACTCTCGCCATCCCCCATCATCATCATCAAAATTTACGACTCCTTCACCACCTCGCCAAGCCAAGGTCGTGGTTCGAGCTGGCCG CAAGACTCACGAGCTCATAGTCGACTTTGCCACACGATCCATCGTATCGAACCACGTCTACACTGGCCATGGTTACCCTCCTTTGTCGTTCCAGGAGTTG TTCCAGATTGCTTACTTGAGAGATTTTGATTTAAGCGAGTTTGGGTTCGGGAGGAGCGCGGATTTGCTGCAATCGAGGATCGATTGCCCTGCGAATGCGG TGTATGTGGATGGGTATGTTGCTGGAAGAGATGGTACGGCGCAGAAGATGGGGAATGTGATTTGTGTTTTTGAGAAGTATAGTGGGAGTGTTGGTTTGAG ACATACGGAGATTAATGTACCTGGGAGAGTGATCAGAAGTGGGGAACCTGAGATTAGCTTGGTTGTCAGGATGGTGGCTACTGTAGGAAATTATGATTAC ATTCTCGACTGGGAGTTCAAGGAAAGCGGCTCTATCAAAGTTGGGTCAACTTTTGTCAGGGTATATGTTCGATTCGATAGGCTCGCGAGTTTAGTTGAAC TCGAATTGAGAGCCAACTCAAATACTAACTCGAGTATATGGCTCGTTAGTAGACTCAATAATGCCTTGTGTGTTTGCCACGAATACCTTACAAATTCAAT TGTGCTAACGAAAATGAATCGTGGAGGTGAAGGCCACCGAACAGATCTACACAGACGGGACCGGAGAAATGCATACGGCACCCTGGTGACAGAGAACGCC GTTGCGATTAACCACGACCATTACCTGACATACTATCTCGACCTAGACGTTGACGGCAAACACAACTCATTCGTGAAATCAAAGCTACAGACAGTGAGAG TTCCGCCGGTCAACGCGCCTTCCCCGAGAAGTTACTGGACGGTCGTTAAGGAGACGGCGAAAACCGAAGCAGATGCTAGAGTCCGGCTCGGTGTCGAGCC GGAGGAATTGGTTATTGTGAATCCGAATAAACGAACCAGACTTGGGAACCAAGTGGGCTACCGGCTGATCCCGGGTCAGCCGGGTGAAGACGGGTTATCG GTTTGGACCCGGAAAAACAGAGGGATTGAGAACAGAGATATCGTTCTGTGGTACACTGTTGCGTTCCATCATACTCCTTGCCAGGAAGATTTCCCGACAA TGTCGACGCTTCACGACGGGTTTGAGCTCCGACCCGCTAATTTCTTCGAAAAGAACCCGGTGGTCAACTAA
AA sequence Show only first row Show all	>Lus10041208 pacid=23179804 polypeptide=Lus10041208 locus=Lus10041208.g ID=Lus10041208.BGIv1.0 annot-version=v1.0 MTNPLFQVVALAILLSCSFPLSHSHPLDPLSLTEINHLNSRHPPSSSSKFTTPSPPRQAKVVVRAGRKTHELIVDFATRSIVSNHVYTGHGYPPLSFQEL FQIAYLRDFDLSEFGFGRSADLLQSRIDCPANAVYVDGYVAGRDGTAQKMGNVICVFEKYSGSVGLRHTEINVPGRVIRSGEPEISLVVRMVATVGNYDY ILDWEFKESGSIKVGSTFVRVYVRFDRLASLVELELRANSNTNSSIWLVSRLNNALCVCHEYLTNSIVLTKMNRGGEGHRTDLHRRDRRNAYGTLVTENA VAINHDHYLTYYLDLDVDGKHNSFVKSKLQTVRVPPVNAPSPRSYWTVVKETAKTEADARVRLGVEPEELVIVNPNKRTRLGNQVGYRLIPGQPGEDGLS VWTRKNRGIENRDIVLWYTVAFHHTPCQEDFPTMSTLHDGFELRPANFFEKNPVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31690			Copper amine oxidase family pr...		Lus10041208 [exp]	0	1
AT1G30870			Peroxidase superfamily protein...		Lus10020864 [exp]	6.9	0.7495
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10018342 [exp]	23.5	0.7013
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10028653 [exp]	47.0	0.6928
AT2G41190			Transmembrane amino acid trans...		Lus10003817 [exp]	47.1	0.6808
AT1G04560			AWPM-19-like family protein (....		Lus10033541 [exp]	47.5	0.6397
					Lus10003448 [exp]	90.9	0.6505
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001032 [exp]	93.5	0.6388
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10027046 [exp]	108.8	0.6268
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	109.7	0.6208
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	119.3	0.6151

Compare expression of checked genes

Lus10041208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.