Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02770 292 / 2e-101 PSAD-1 photosystem I subunit D-1 (.1) AT1G03130 288 / 7e-100 PSAD-2 photosystem I subunit D-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021923 [exp] 377 / 3e-135 AT1G03130 309 / 4e-108 photosystem I subunit D-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089400 [exp] 307 / 1e-107 AT1G03130 289 / 1e-100 photosystem I subunit D-2 (.1) Potri.008G151600 [exp] 307 / 2e-107 AT1G03130 300 / 8e-105 photosystem I subunit D-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02531 [flax] [poplar] PsaD PsaD
Representative CDS sequence Show only first row Show all	>Lus10041209 pacid=23179865 polypeptide=Lus10041209 locus=Lus10041209.g ID=Lus10041209.BGIv1.0 annot-version=v1.0 ATGGCAGCCATGGCAACACAATCCACTCTCTTCACTCCTCCAACTCTCAAACCCGCTTCCCTCTCCCGCACCACGAAATCATCCTTCGTCTCAATCCCCA CCTCCCTCACAAAGCTCTCTCACGCCAAAACCGCCGTCGTCAGGGCCGCCGCACCAGAGAGCAGCGCCGCCCCGGAGGCGCCACCAAAAAAGGAAGCGCC TGGCGGATTCACCCCGCCGGAGCTGGACCCCAGCACCCCATCCCCGATCTTCGGCGGGAGCACCGGCGGGCTTCTGAGGAAAGCCCAAGTGGAAGAATTC TACGTCATAACCTGGGAGTCCCCTAAAGAGCAGATCTTCGAGATGCCCACCGGCGGAGCTGCGATCATGAGGGAAGGTCCCAACCTGCTGAAGCTGGCGA GGAAAGAACAATGCTTGGCCTTGGGGACTAGGTTGAGGTCCAAATACAAGATCAAGTACCAGTTTTACAGGGTGTTCCCCAACGGAGAGGTTCAGTATTT GCATCCCAAAGATGGAGTTTACCCTGAGAAGGTTAACCCTGGTAGGGAAGGAGTCGGGCAGAACTTCAGGTCCATTGGTAAGAATGTTAGCCCTATCGAG GTCAAGTTTACCGGGAAGCAGACATATGATTTGTGA
AA sequence Show only first row Show all	>Lus10041209 pacid=23179865 polypeptide=Lus10041209 locus=Lus10041209.g ID=Lus10041209.BGIv1.0 annot-version=v1.0 MAAMATQSTLFTPPTLKPASLSRTTKSSFVSIPTSLTKLSHAKTAVVRAAAPESSAAPEAPPKKEAPGGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEF YVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIE VKFTGKQTYDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	0	1
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	1.0	0.9890
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10023509 [exp]	2.4	0.9603
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	2.8	0.9572
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10040391 [exp]	3.5	0.9581
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10020199 [exp]	4.2	0.9375
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10040639 [exp]	5.0	0.9517
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10039697 [exp]	5.3	0.9383
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10003965 [exp]	6.5	0.9407
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10029823 [exp]	7.5	0.9381
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	8.1	0.9249

Compare expression of checked genes

Lus10041209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.