Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26340 219 / 4e-65 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 180 / 9e-51 STP7 sugar transporter protein 7 (.1) AT5G26250 176 / 2e-49 Major facilitator superfamily protein (.1) AT1G11260 170 / 8e-47 ATSTP1, STP1 sugar transporter 1 (.1) AT3G05960 167 / 8e-46 ATSTP6 sugar transporter 6 (.1) AT1G07340 164 / 6e-45 ATSTP2 sugar transporter 2 (.1) AT3G19940 162 / 5e-44 Major facilitator superfamily protein (.1) AT1G77210 159 / 4e-43 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT4G21480 159 / 4e-43 STP12 sugar transporter protein 12 (.1) AT5G23270 159 / 4e-43 ATSTP11, STP11 sugar transporter 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021924 [exp] 273 / 1e-85 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 245 / 5e-75 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 242 / 7e-74 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 170 / 7e-47 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10018422 [exp] 167 / 6e-46 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 166 / 3e-45 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10005870 [exp] 161 / 1e-43 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10021926 [exp] 159 / 3e-43 AT5G26250 656 / 0.0 Major facilitator superfamily protein (.1) Lus10009656 [exp] 159 / 6e-43 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151100 [exp] 234 / 4e-71 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 231 / 1e-69 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.004G233500 [exp] 182 / 2e-51 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G072800 [exp] 173 / 4e-48 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248900 [exp] 171 / 3e-47 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150700 [exp] 169 / 1e-46 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150800 [exp] 169 / 1e-46 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 169 / 1e-46 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 169 / 1e-46 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.006G189100 [exp] 169 / 2e-46 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10041210 pacid=23179881 polypeptide=Lus10041210 locus=Lus10041210.g ID=Lus10041210.BGIv1.0 annot-version=v1.0 ATGGCAGGCGGAGGATTCACTACAACCGCCGCCGAAGGCTTTGAATTCGAGGCTAAAATTACTCCCATCGTTGTCATCTCCTGTATTATGGCGGCCACCG GCGGCCTCATGTTCGGCTACGATATTGGCGTCTCAGGGGGAGTGACAGCGATGCCGGCATTTCAGCAGCAGTTTTTTCCGGCGGTGTACAAGAAGACCCA GGATCCGAGTCTGAACAGGAGCAACTACTGCAAGTACGATAACCAAGGCTTGCAGTTGTTCACTTCGTCGCTCTACTTGGCCGGGCTAATTGCCACTTTC TTCGCGTCCGTCACCACCAGGAAGTTCGGAAGGCGTCCGACCATGTTGATCGCCGGATTGTTGTTCATCGCCGGCGTGGTGCTTAATGCTGCTGCTCGGG ACCTCGCTATGCTCATCATCGGCAGGATCTTACTCGGCTGTGGCGTTGGCTTCGCTAATCAGGTGATCATCGCCGTGGTGCTGGGTGCCAAACTCAACGA CTACGAAAAACTTGACAAAGGACTCGCCATCCTAGTGGTGGTCATGGTCTGCACTTTCGTCTCGGCATTTGCGTGGTCGTGGGGCCCACTGGGTTGGCTG ATACCTAGCGAGATTTTCCCGCTGGAGACCCGGTCGGCGGGGCAGAGTGTGGCCGTGTGCGTGAACTTGTTTTTCACCTTCGTCATTGGTCAGGCATTTC ATTCGATGTTGTGTCACTTTAAGTTCGGGATTTTCTTCTTCTTCTCCGGATGGGTGACCGTGATGTCAATTTTCGTGCTGGTTTTGGTCCCCGAGACGAA GAATGTTCCGATAGAGGAGATGACTGAGAGCGTTTGGCGTCGACATTGGTTTTGGAAGAGGTTTATGGTGGGAGATGGTGATGACGGTGGGGGTGGGGTA GCTTCTGAGATGGATGACAAGGTTTCGAGTGGTGGGCATAGTGGTGATAATTGCAGCGGGTTGGGGGTCAAAATGACCGAGTACGAAAGGCTCGACAAAG GGCTCGCCATCCTGGTGGTGGGGTTGGTGCGCACTTTCGTGTCGGCATTTGCGTGGTCGTGGGGCCCTCTGGCTTGGTTGATCCCCAACGACACATTCTC GCTGGAGACACGGTCAGCGGGGCAGAGTGTGACCGTTTGCGTCAACTTTCTGTTCACCTTCATCATAGCTCAGTCGTTTCTTTCGATGTTATGCCACTTC ACGTTCGGGATTTTCATCTTCTTTTCCAGGTGGGCGGCGGTGATGTCAGTTTTCGTGCTAGTTTTGGTCCCCGAAACGAAAAATGTTACGATAGAGGAGA TGACTGAGATGGTTTGGCGTCGACATTGGTTTTGGAAGAGGTTTATGGTGGGAGATGGTACTGGTGGTGGGAATGGGGTATCTGCAGAGATGGACGAGAG GGTTACGAGTGGTGGGAGTTCGAAGATTAATGGTGTTGGGGTTGAATATTAA
AA sequence Show only first row Show all	>Lus10041210 pacid=23179881 polypeptide=Lus10041210 locus=Lus10041210.g ID=Lus10041210.BGIv1.0 annot-version=v1.0 MAGGGFTTTAAEGFEFEAKITPIVVISCIMAATGGLMFGYDIGVSGGVTAMPAFQQQFFPAVYKKTQDPSLNRSNYCKYDNQGLQLFTSSLYLAGLIATF FASVTTRKFGRRPTMLIAGLLFIAGVVLNAAARDLAMLIIGRILLGCGVGFANQVIIAVVLGAKLNDYEKLDKGLAILVVVMVCTFVSAFAWSWGPLGWL IPSEIFPLETRSAGQSVAVCVNLFFTFVIGQAFHSMLCHFKFGIFFFFSGWVTVMSIFVLVLVPETKNVPIEEMTESVWRRHWFWKRFMVGDGDDGGGGV ASEMDDKVSSGGHSGDNCSGLGVKMTEYERLDKGLAILVVGLVRTFVSAFAWSWGPLAWLIPNDTFSLETRSAGQSVTVCVNFLFTFIIAQSFLSMLCHF TFGIFIFFSRWAAVMSVFVLVLVPETKNVTIEEMTEMVWRRHWFWKRFMVGDGTGGGNGVSAEMDERVTSGGSSKINGVGVEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	1.4	0.9664
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	2.4	0.9493
					Lus10041664 [exp]	3.5	0.9353
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	3.9	0.9479
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	4.5	0.9227
AT1G10340			Ankyrin repeat family protein ...		Lus10038609 [exp]	5.1	0.8888
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	6.3	0.8676
AT4G35150			O-methyltransferase family pro...		Lus10006691 [exp]	7.4	0.8898
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	8.4	0.8956
AT1G31710			Copper amine oxidase family pr...		Lus10010542 [exp]	9.7	0.8686

Compare expression of checked genes

Lus10041210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.