Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26250 273 / 3e-89 Major facilitator superfamily protein (.1) AT3G05960 263 / 4e-85 ATSTP6 sugar transporter 6 (.1) AT5G26340 248 / 2e-79 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G07340 232 / 2e-73 ATSTP2 sugar transporter 2 (.1) AT4G21480 228 / 8e-72 STP12 sugar transporter protein 12 (.1) AT1G50310 228 / 2e-71 ATSTP9 sugar transporter 9 (.1) AT3G19940 217 / 2e-67 Major facilitator superfamily protein (.1) AT3G19930 215 / 1e-66 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 207 / 7e-64 ATSTP11, STP11 sugar transporter 11 (.1) AT4G02050 207 / 1e-63 STP7 sugar transporter protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021926 [exp] 424 / 2e-148 AT5G26250 656 / 0.0 Major facilitator superfamily protein (.1) Lus10002452 [exp] 363 / 1e-124 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10010532 [exp] 352 / 2e-120 AT5G26250 588 / 0.0 Major facilitator superfamily protein (.1) Lus10002450 [exp] 249 / 1e-79 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 249 / 1e-79 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10005870 [exp] 243 / 2e-77 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 224 / 7e-70 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10040993 [exp] 218 / 5e-69 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10013441 [exp] 215 / 2e-66 AT1G50310 731 / 0.0 sugar transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090000 [exp] 334 / 2e-113 AT5G26250 664 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150800 [exp] 291 / 3e-96 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150700 [exp] 291 / 3e-96 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248900 [exp] 266 / 1e-86 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042900 [exp] 250 / 5e-80 AT5G26250 577 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 249 / 8e-80 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 246 / 2e-78 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.011G042100 [exp] 221 / 3e-69 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.005G090700 [exp] 219 / 3e-68 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 215 / 9e-67 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10041212 pacid=23179825 polypeptide=Lus10041212 locus=Lus10041212.g ID=Lus10041212.BGIv1.0 annot-version=v1.0 ATGTACAAGGGTTACAAGACGCTGAAACTCGTCAGAGGAGTAGACGACGTGGACGCCGAATACACCCAAATCAAGCTCGCCTGCGAGGCCGGAAAACGAG TAAAATCCCCGATGAAGGAGCTCATGAAGAAATCAAGCTTCCCGCCGCTGATCATCGGTATCCTGCTCCAAGTCTTCCAGCAATTCACAGGGATCAACGC CATCATGTTCTACGCCCCGGTGCTTTTCCAGACCGTCGGGTTCAAGAACGACGGCGCTCTTTTGTCCGCCGTCATCACCGGAGTCGTCAACGTGTTCAGC ACCGTGGTCTCCGTGATCGTCGTCGATAAACTGGGATACAGGGCTCTCCTCCTGCAGGCGTGCTGCCAAATGCTCGTGGCGCAGATAGCCATCGGAGTGA TACTGCACATGAACCTGACGGCGACCGGATCGTTGGTCCTACTAGTGTGTCTGTTCGTGATGGCATTCGCTTGGTCGTGGGGACCTCTGGGTTGGCTGAT TCCCAGCGAAACATTCCCGGTGGAGACTAGAGCTGCAGGATTCGCGTTCGCCGTCAGCTCAAACATGCTCTTCACTTTCGCCATCGATCAAGCTTTCCTC TCCATGATGTGTCACATGAAGGCCTACATCTTCTTCTTCTTCGCCGCGTGGATCTTCGTCATGGGCATCTTCGTCCTCTTCCTCCTGCCCGAGTCTAAAG GAGTTCCAATCGACGCCATGATCGATCGTGTCTGGAAGAAACATCCTGTCTGTAGAAAATTCATTGACTAA
AA sequence Show only first row Show all	>Lus10041212 pacid=23179825 polypeptide=Lus10041212 locus=Lus10041212.g ID=Lus10041212.BGIv1.0 annot-version=v1.0 MYKGYKTLKLVRGVDDVDAEYTQIKLACEAGKRVKSPMKELMKKSSFPPLIIGILLQVFQQFTGINAIMFYAPVLFQTVGFKNDGALLSAVITGVVNVFS TVVSVIVVDKLGYRALLLQACCQMLVAQIAIGVILHMNLTATGSLVLLVCLFVMAFAWSWGPLGWLIPSETFPVETRAAGFAFAVSSNMLFTFAIDQAFL SMMCHMKAYIFFFFAAWIFVMGIFVLFLLPESKGVPIDAMIDRVWKKHPVCRKFID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	0	1
					Lus10029449 [exp]	2.4	0.8925
					Lus10039781 [exp]	3.0	0.9079
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	3.5	0.9117
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	3.7	0.9138
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10003663 [exp]	4.6	0.8572
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	7.9	0.8911
AT2G22560			Kinase interacting (KIP1-like)...		Lus10012730 [exp]	8.5	0.8498
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	8.9	0.8725
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10024298 [exp]	9.1	0.7995
					Lus10026969 [exp]	9.8	0.7927

Compare expression of checked genes

Lus10041212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.