Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45190 157 / 7e-43 Cyclin family protein (.1.2) AT4G19600 156 / 1e-42 CYCT1;4 Cyclin family protein (.1) AT4G19560 140 / 3e-37 CYCT1;2 Cyclin family protein (.1) AT1G27630 118 / 3e-30 CYCT1;3 cyclin T 1;3 (.1) AT1G35440 105 / 5e-26 CYCT1;1 cyclin T1;1 (.1) AT2G26430 66 / 1e-11 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021927 [exp] 644 / 0 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10040640 [exp] 147 / 2e-39 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10041418 [exp] 72 / 2e-13 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10038329 [exp] 67 / 7e-12 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10036192 [exp] 67 / 8e-12 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10036191 [exp] 60 / 3e-11 AT5G45190 109 / 1e-29 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090400 [exp] 313 / 4e-105 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.008G150500 [exp] 313 / 1e-104 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.003G148800 [exp] 159 / 2e-43 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 155 / 5e-42 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 152 / 1e-40 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 145 / 2e-38 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 134 / 2e-35 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.008G043600 [exp] 69 / 2e-12 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041213 pacid=23180027 polypeptide=Lus10041213 locus=Lus10041213.g ID=Lus10041213.BGIv1.0 annot-version=v1.0 ATGTCTTTTTCGAGGAACTATGGATCACGAGGCGGAACTATGCTCGATGATCGTTCATCCAACTTCAGTAGGAGCAGCTACAACTGGAGCACATTTGTGA ACGTTGGGTGGAATGATAATCACAATAGTCGGCTGAATAATCAGGATTTCTTAGACTTCTCTTGGAAACTCACGAGTAATGTTAATGATAGTGACAAATA CGGCAACCTTCCTAGCAGTGCTCCGTCCCTAAAGAGGAGAAAGTTCAGCTCTACCATGTGGGAAGATGGTGCAAGACATTATCTGCAACCTAACTCTTTT GAGGATGGTGGTAGAGACTATCAGCATTCAACTTCATATGGAGATGTTGCTCGGTACCCAAAACTTTCTAACACATATGGCAACCATCAGAGACAGTATG TGCAGCCTAAGATGTATAGAGATGGTGGAAGATGCCTTCCACAGTCCAGCTTTTATGAAACTTCTGTCCCTTTAATTCAAAACAATTGGCTCTCTGCTCC TTTGAGGTCCAACACTGAGGCATCCACGTCTACTAGGTGCAAACGTAGCCGCTCAATGCTAGAAGTTGAGGAACCACTTTTCATGTCAAAGGATCACATT GAAAAATGCTCTCCCTCTAGGAAAGATGGAATTGATGCTCAACATGAAACGCATTTGCGTTACTCATATTGTGCTTTCCTTCAAGATCTTGGTCTGCGGC TTGATTTGCCACAAACAACTACTGGCACTGCCATGGTTTTGTGTCACCGGTTTTTTATTCGTCGTTCACATGCTTGCCATGACAGATTTTTAATTGCTAC TGCTGCTCTTTTCCTTGCTGCCAAGTCAGAGGAGACTGCACGCCCTTTGAACGATGTATTGAGGAAATCCTGTGAAATTCTTCATAAGCAAGATTTCAGT TTATTGTCATATATACTCCCCATTGACTGGTTTGAGCAGTATCGGGAGCGAGTGATTACGGCCGAGCAAATGATATTGACGGCTCTTAATTTTGAGCTTG GTGTGCAGCATCCTTATGCTCCCCTAACATCTGTCCTCGACAAGTTAGTTCTTGCTGTAAGCAATTTGGTGTGGCTATTCCTTGTCTGTGTGTCTGTGGA TGATCTCAGACTAATCCTGTTGGAGACGTGA
AA sequence Show only first row Show all	>Lus10041213 pacid=23180027 polypeptide=Lus10041213 locus=Lus10041213.g ID=Lus10041213.BGIv1.0 annot-version=v1.0 MSFSRNYGSRGGTMLDDRSSNFSRSSYNWSTFVNVGWNDNHNSRLNNQDFLDFSWKLTSNVNDSDKYGNLPSSAPSLKRRKFSSTMWEDGARHYLQPNSF EDGGRDYQHSTSYGDVARYPKLSNTYGNHQRQYVQPKMYRDGGRCLPQSSFYETSVPLIQNNWLSAPLRSNTEASTSTRCKRSRSMLEVEEPLFMSKDHI EKCSPSRKDGIDAQHETHLRYSYCAFLQDLGLRLDLPQTTTGTAMVLCHRFFIRRSHACHDRFLIATAALFLAAKSEETARPLNDVLRKSCEILHKQDFS LLSYILPIDWFEQYRERVITAEQMILTALNFELGVQHPYAPLTSVLDKLVLAVSNLVWLFLVCVSVDDLRLILLET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	2.2	0.9093
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	2.8	0.8785
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	3.2	0.9024
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	3.5	0.9001
AT3G51130			unknown protein		Lus10014270 [exp]	4.2	0.8840
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	5.5	0.8901
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	6.0	0.8780
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	8.0	0.8967
AT3G49490			unknown protein		Lus10015581 [exp]	9.2	0.8725
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	10.8	0.8720

Compare expression of checked genes

Lus10041213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.