Plant FIBer expression Database

Lus10041214 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26230 85 / 8e-20 MAKR1 membrane-associated kinase regulator 1, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021928
[exp]
197 / 2e-63 AT5G26230 183 / 2e-55 membrane-associated kinase regulator 1, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G090500
[exp]
124 / 2e-34 AT5G26230 150 / 5e-42 membrane-associated kinase regulator 1, unknown protein
PFAM info
Representative CDS sequence
>Lus10041214 pacid=23179971 polypeptide=Lus10041214 locus=Lus10041214.g ID=Lus10041214.BGIv1.0 annot-version=v1.0
ATGAGTGTGACGGCGAAGGAAGTTATCAGAAAGTACTTGAAAAAAGTTAAGCCGCTTTACGAGAAGCTGTCCCAGAAGCAGCTGCAGAAAATGGGCATTC
CGAACGGTACTACTACTATGTCGTCTGGATCCGGAAAGGATGCGATTCCAAACGACGACGTTTTAGGGAAGGACTCGAATAGCGGCGGCGGCGGCAACAA
CACGGTGCCTGTTAGAGGCTTCTCGCACTCGTTCTCAGGCAACTTGAGGTACCCGAGGAAGCGGAGCTGCGCCGCCAGCTGTCCGTCGTCGATGAGGTCT
TCACCGAGCCACTCCGGTGTGCTTTCACGGAGCGGGTTCACGAGCGGCGGGTCGGGTAATGCCAGATCGGGAAGATCAGGCGGTGGTTGCGGCTACGGAG
ACGTGTCGTCCATGGAGGAGCTGCAGAGCGCGATTCAAGGAGCGATCACACATTGCAAAAACTCGATGATGCAGCAAGCTGGGAAGGCGATCTTGATCAG
CAACGAAATCTGA
AA sequence
>Lus10041214 pacid=23179971 polypeptide=Lus10041214 locus=Lus10041214.g ID=Lus10041214.BGIv1.0 annot-version=v1.0
MSVTAKEVIRKYLKKVKPLYEKLSQKQLQKMGIPNGTTTMSSGSGKDAIPNDDVLGKDSNSGGGGNNTVPVRGFSHSFSGNLRYPRKRSCAASCPSSMRS
SPSHSGVLSRSGFTSGGSGNARSGRSGGGCGYGDVSSMEELQSAIQGAITHCKNSMMQQAGKAILISNEI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G26230 MAKR1 membrane-associated kinase reg... Lus10041214
[exp]
0 1
AT4G24790 AAA-type ATPase family protein... Lus10033035
[exp]
2.8 0.9140
AT4G24790 AAA-type ATPase family protein... Lus10013665
[exp]
7.3 0.8638
AT1G67590 Remorin family protein (.1.2) Lus10036997
[exp]
8.1 0.8665
AT1G04870 PRMT10, ATPRMT1... protein arginine methyltransfe... Lus10019439
[exp]
11.0 0.8915
AT5G13750 ZIFL1 zinc induced facilitator-like ... Lus10000256
[exp]
13.2 0.8121
AT3G26330 CYP71B37 "cytochrome P450, family 71, s... Lus10028926
[exp]
13.4 0.8555
AT5G37010 unknown protein Lus10020782
[exp]
18.8 0.8752
AT4G37250 Leucine-rich repeat protein ki... Lus10019315
[exp]
19.6 0.8168
AT1G75270 DHAR2 dehydroascorbate reductase 2 (... Lus10023442
[exp]
20.4 0.8338
AT2G33560 BUBR1 BUB1-related (BUB1: budding un... Lus10013199
[exp]
20.4 0.8755

Lus10041214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.