Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19340 86 / 2e-20 unknown protein AT3G05980 83 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010529 [exp] 117 / 1e-33 AT5G19340 98 / 1e-25 unknown protein Lus10002455 [exp] 121 / 2e-33 AT3G05980 142 / 4e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150300 [exp] 134 / 6e-39 AT3G05980 154 / 3e-46 unknown protein Potri.010G090700 [exp] 112 / 2e-30 AT3G05980 141 / 2e-41 unknown protein Potri.007G042600 [exp] 41 / 0.0001 AT5G66800 121 / 4e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041215 pacid=23179519 polypeptide=Lus10041215 locus=Lus10041215.g ID=Lus10041215.BGIv1.0 annot-version=v1.0 ATGGTGTCTTTAGAAACAATTCAAGCATCCACCGATCACCAACAGCAAACATCAAGCCCCCGAATCTCATTCTCCGCCGAGTTTCTCGACGACAACAACA ACTTCACCTCCGTCCGTACCTCTGACTCAGATCCAAAATCCCTCAAACCGCCGCTGACTACGATTCGACTCGCACCACCTGCGGCTGGGGCGGTTATTAT CCGGAGCAAGGAATCAGAGCAGCAGCAGCCGTCGACGGGGACGGCTGCGATGGGGATGAATTGGTTCGTGGACGACGATCCGTCGCCGCGGCCGCCAAAG TGTACTGTTCTGTGGAAGGAATTGCTGAGGCTTAAGAAGCAGAGGCCGCCTGTTGCTTCGTCTCTTTCGCCTTCTTCGTCCTCGTCTTCGTCATCGTCGT CAAGCTCGCTGCCGGATGTAGCGGAGAGAGAAAGCAACGGTGGTAAGGATAGAAAAGAGGGGAAGAAGAAAGGGCTGGAGAGGACGAGATCGGCGACTCT TAGGATTAGGCCGATGATCAATGTCCCCATTTGTAGCCAGATGAAGACCACCACCACCACCCATCATTCTTCATTGCCGCCATTTTTCCCGGTTAAGAAA GGCAGAGCATTAGATACTAGATAA
AA sequence Show only first row Show all	>Lus10041215 pacid=23179519 polypeptide=Lus10041215 locus=Lus10041215.g ID=Lus10041215.BGIv1.0 annot-version=v1.0 MVSLETIQASTDHQQQTSSPRISFSAEFLDDNNNFTSVRTSDSDPKSLKPPLTTIRLAPPAAGAVIIRSKESEQQQPSTGTAAMGMNWFVDDDPSPRPPK CTVLWKELLRLKKQRPPVASSLSPSSSSSSSSSSSSLPDVAERESNGGKDRKEGKKKGLERTRSATLRIRPMINVPICSQMKTTTTTHHSSLPPFFPVKK GRALDTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19340			unknown protein		Lus10041215 [exp]	0	1
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	1.4	0.9627
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	2.0	0.9605
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	3.9	0.9331
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	4.2	0.9541
AT3G06868			unknown protein		Lus10024784 [exp]	4.5	0.9492
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	5.5	0.9474
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	6.3	0.9501
AT2G45260			Plant protein of unknown funct...		Lus10009923 [exp]	7.1	0.9315
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	7.7	0.9367
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	8.1	0.9383

Compare expression of checked genes

Lus10041215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.