Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19280 591 / 0 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) AT4G31750 94 / 9e-21 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 94 / 1e-20 Protein phosphatase 2C family protein (.1) AT5G24940 90 / 5e-19 Protein phosphatase 2C family protein (.1) AT3G51470 85 / 1e-17 Protein phosphatase 2C family protein (.1) AT4G28400 80 / 3e-16 Protein phosphatase 2C family protein (.1) AT1G43900 76 / 9e-15 Protein phosphatase 2C family protein (.1) AT2G20630 75 / 9e-15 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G22280 75 / 1e-14 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT5G53140 76 / 2e-14 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021929 [exp] 1028 / 0 AT5G19280 595 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10010521 [exp] 778 / 0 AT5G19280 614 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10034062 [exp] 730 / 0 AT5G19280 549 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10020104 [exp] 89 / 4e-19 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 88 / 5e-19 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 86 / 2e-18 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 86 / 3e-18 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 81 / 3e-16 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 81 / 4e-16 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G091500 [exp] 736 / 0 AT5G19280 636 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.008G149700 [exp] 720 / 0 AT5G19280 644 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.018G013900 [exp] 92 / 3e-20 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 89 / 2e-19 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G102500 [exp] 87 / 2e-18 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 82 / 1e-16 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.013G099400 [exp] 82 / 2e-16 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.002G190400 [exp] 80 / 1e-15 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2) Potri.018G115100 [exp] 79 / 1e-15 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.007G058700 [exp] 79 / 1e-15 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10041216 pacid=23179640 polypeptide=Lus10041216 locus=Lus10041216.g ID=Lus10041216.BGIv1.0 annot-version=v1.0 ATGATGACGCCTTCTCTTCACGCCATTATCGCTATTCTTCTCCTTTTGCTGCTTCTCCTCCTCCTCCTCATCCTCATCGCCTGTAGGCCATGGCGCCTCT TCCTCTCTTCTTCTTCCTCCCGTTCTCGTTCTTCTACTCTTATGACTGGCGATGAGGAAGAGAGGCCACTTGTGTCAAATGTTGCGGGTGCCCATGATGA AACCAATCAAGGTGCAATAATTTATGATATTGAGGAAGCTTGTCCCCAAAATGATGGGCGTTTGCGTACGCCCCAAATGGAGGGACTTGTCCACAAACAA AGAATTCCTTCAGCATCTCCTCACGTGGCTCCCCAAGCAGTTGATAGCTTGATTTTAGAAGTATTTCCAGATCCTGTTGAGGATGTACCAGTTGGACAAA CCCTCAAGTATTCTCCACTTGCTCGACGCATGCCTGAGGTGCATAAACAGTTTAGGCCAGACAATCAAATTCCTAATGCCAAACCTGGTTCACAAACCAA TAGGTTACCAGAGTTCACAATCAAACTTACTGATGATCAAAGAAGTTGTCTCTCCCTTGAGGTCATCTCTGGTCCTTCTAGTGGACAACGCTTCTCTGTA CAATCAACAAGCTCTTCAAGGCTTACTGTCACTCTTGGAAGAGTTTCTAGTGACTTATTGGTACGAGATTCAGAGGTGTCAGGGAAACATGCTATGATCA ACTGCAATGCCGACAAAAAGAAATGGGAGGTGGTTGACATGGGTAGCCTTAATGGAACTCTTTTAAACTCTCGGCCAATCAACCACCCTGATCCTGGGAC TAGACAGTGGGGTAAGCCTGTAGAGCTTTCAAGTGGGGACATAATAACTCTTGGCACAACGTCGAACATACAGGTCACAGTTACATCCAAGTCTGAAAGC TGGATGCCCTTTGGTGTGGGCATGGCTTCAGATCCTATGGCCTTGCGCCGTGGTGGAAAGAAGCTACCTATGGAAGATGTGTGCTATTATTTCTGGCCCC TGCCAGGCATTCATGAGTTTGGTGCTTTTGGCATTTGCGATGGACATGGTGGAGTAGCAGCTGCGAAATCTGCCAGCAAGATGTTGCCAGAGAAAGTAGC CAGTATTTTATCAGACTCAGTAATACGGGGGAAGGTTATATCACTATGCGATGCTTCAGATGTTCTTAGAAATGTATTTTCTCAGACAGAAGCTTCCATG AATAACCACTATGAGGGTTGCACAGCAACGTTGCTTCTGGTTTGGCATGATGGAGATGGCCGTTTCTTTGCACAATGTGCAAATGTTGGGGATTCTGCAT GTGTTATGAATGTTAAGGGGAAGCAGATCAAGATGACAGAAGACCACAGAGTAACCAGTTCTTCTGAAAGACTTCGAATAAATGGAATAGGAGAGCCATT AAGAGATGGGGAAACACGCCTTCATGGTTTGAATCTTGCTCGAATGCTTGGAGACAAATTCCTGAAACAGCAAGATGCTCGCTTCAGTTCAGAGCCTTAC ATAAGTCCAGCTGTGCACATAGATCGATCAAGCAGTTGCTTTGCAGTATTAGCCAGCGATGGTTTCTGGGATGTTATCAGTGTTAAAAAGGCAGTTCAAC TTGTCCAGCAGGCAAAGGAGAAGCAGCATGTAGATGGGGAGAATCCAGCCGAAAAGGTTGCTAATGTTTTGCTTGGTGAAGCTAGAACACAGCGTACAAA GGATAATACTTCCATAATTTTCTTGGATTTTGATGCCAAGTTTAGATCACCTTCTTGA
AA sequence Show only first row Show all	>Lus10041216 pacid=23179640 polypeptide=Lus10041216 locus=Lus10041216.g ID=Lus10041216.BGIv1.0 annot-version=v1.0 MMTPSLHAIIAILLLLLLLLLLLILIACRPWRLFLSSSSSRSRSSTLMTGDEEERPLVSNVAGAHDETNQGAIIYDIEEACPQNDGRLRTPQMEGLVHKQ RIPSASPHVAPQAVDSLILEVFPDPVEDVPVGQTLKYSPLARRMPEVHKQFRPDNQIPNAKPGSQTNRLPEFTIKLTDDQRSCLSLEVISGPSSGQRFSV QSTSSSRLTVTLGRVSSDLLVRDSEVSGKHAMINCNADKKKWEVVDMGSLNGTLLNSRPINHPDPGTRQWGKPVELSSGDIITLGTTSNIQVTVTSKSES WMPFGVGMASDPMALRRGGKKLPMEDVCYYFWPLPGIHEFGAFGICDGHGGVAAAKSASKMLPEKVASILSDSVIRGKVISLCDASDVLRNVFSQTEASM NNHYEGCTATLLLVWHDGDGRFFAQCANVGDSACVMNVKGKQIKMTEDHRVTSSSERLRINGIGEPLRDGETRLHGLNLARMLGDKFLKQQDARFSSEPY ISPAVHIDRSSSCFAVLASDGFWDVISVKKAVQLVQQAKEKQHVDGENPAEKVANVLLGEARTQRTKDNTSIIFLDFDAKFRSPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	0	1
AT2G31130			unknown protein		Lus10017672 [exp]	2.2	0.9374
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	3.0	0.9276
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	3.9	0.9252
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	5.5	0.9348
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	8.2	0.9272
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	8.4	0.9226
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	11.0	0.9186
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	11.2	0.9244
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10008285 [exp]	11.5	0.9189
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	11.6	0.9205

Compare expression of checked genes

Lus10041216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.