Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19260 104 / 2e-26 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT3G06020 81 / 1e-17 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1) AT1G03170 66 / 2e-12 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT4G02810 61 / 1e-10 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT5G22090 47 / 5e-06 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021930 [exp] 312 / 4e-109 AT5G19260 68 / 5e-14 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 178 / 1e-54 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 172 / 1e-52 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 80 / 1e-17 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 76 / 9e-16 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 75 / 1e-15 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 62 / 4e-11 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 61 / 3e-10 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 53 / 9e-08 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149600 [exp] 118 / 2e-31 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 107 / 4e-27 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 94 / 2e-22 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 80 / 3e-17 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 65 / 6e-12 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 48 / 2e-06 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.004G144000 [exp] 43 / 3e-05 AT5G22090 45 / 6e-06 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10041217 pacid=23179541 polypeptide=Lus10041217 locus=Lus10041217.g ID=Lus10041217.BGIv1.0 annot-version=v1.0 ATGGGAACCATAGTTTACCAAGGTCTACAGTCTTATCTCGAGTCCCAGATCCTCGAATCCAGGACTCTCCGGCTCAGATTGTCGGCACCCAAGCCGCTGC CGCCACAGCATTTCCTCAAGCCCTGTTTCTCCACTGACGATAAATTGATCAGACAGAAATCCACCGCCGCCGCCGTCGTTGATAATTCCGGCGGATGGGA ATCTATTCAGTCCCTGTCGACAAACACGACGTCGCACCTGCTGAAACCCGCTTCTTATTACACCCAACGCTCCGTTTCATCACTCAGCGATAAAAGCCTC GAGCTTTGCACCGAGAATCTCGGCAGTGAAACCGGATCGGACGACGTCACTTCCGTCGAATCACTCTTCAGTCCTCCTTCTTGGTTTGGATCCGAATCGG AAAGAATTCATTCCGAGCCGTCGCCGCTGCCGCCGACGGGCGAAGAATCAGCCTCACCTCCGGCGACGAACAAGAAGCGGACGAGGTCACCTCCGGCGAC GAACAAGAAGTGGACGAGGAGTAAATCCTATTCGGGGCGGCGGAAGAGCGCCGGGGGGTTTCCTCCGCCGCTGACGACGATGAGCGGGCCGGAGTTGATC CGAGTGAGGCCCCACAGGGAAAACGGGAGGTTGGTGATGGAGGCGGTGAAGTCGCATTCAGCGCCGTCGTGTTTCCAGGCGGAAAGGATCGACGGGGGGC TCCGCCTCTGTGGAGTGGGCGACGGGGGGGGGGGGGGCGAAGAGACAAGGAGCGCGCGCGTACGACTCGGCTGA
AA sequence Show only first row Show all	>Lus10041217 pacid=23179541 polypeptide=Lus10041217 locus=Lus10041217.g ID=Lus10041217.BGIv1.0 annot-version=v1.0 MGTIVYQGLQSYLESQILESRTLRLRLSAPKPLPPQHFLKPCFSTDDKLIRQKSTAAAVVDNSGGWESIQSLSTNTTSHLLKPASYYTQRSVSSLSDKSL ELCTENLGSETGSDDVTSVESLFSPPSWFGSESERIHSEPSPLPPTGEESASPPATNKKRTRSPPATNKKWTRSKSYSGRRKSAGGFPPPLTTMSGPELI RVRPHRENGRLVMEAVKSHSAPSCFQAERIDGGLRLCGVGDGGGGGEETRSARVRLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10041217 [exp]	0	1
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10021930 [exp]	4.7	0.6556
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Lus10031654 [exp]	18.7	0.5989
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031306 [exp]	23.4	0.5660
AT2G28310			Protein of unknown function (D...		Lus10000145 [exp]	24.5	0.5732
AT3G53970			proteasome inhibitor-related (...		Lus10035223 [exp]	29.1	0.5902
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10007689 [exp]	39.2	0.5279
AT3G57450			unknown protein		Lus10019730 [exp]	59.9	0.5547
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10041969 [exp]	75.9	0.4728
					Lus10009611 [exp]	83.2	0.5275
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10030041 [exp]	116.0	0.4914

Compare expression of checked genes

Lus10041217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.