Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06050 241 / 6e-79 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1) AT1G60740 102 / 8e-26 Thioredoxin superfamily protein (.1) AT1G65970 100 / 7e-25 TPX2 thioredoxin-dependent peroxidase 2 (.1) AT1G65980 99 / 2e-24 TPX1 thioredoxin-dependent peroxidase 1 (.1.2) AT3G52960 89 / 4e-20 Thioredoxin superfamily protein (.1) AT3G05260 75 / 8e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G65990 68 / 3e-12 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1) AT1G54870 65 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021932 [exp] 286 / 3e-95 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1) Lus10021931 [exp] 117 / 8e-30 AT3G05260 364 / 3e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033745 [exp] 105 / 1e-25 AT1G54870 365 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023662 [exp] 93 / 2e-22 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2) Lus10015077 [exp] 93 / 2e-22 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10023180 [exp] 93 / 2e-22 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10002843 [exp] 88 / 6e-20 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1) Lus10003373 [exp] 87 / 2e-19 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1) Lus10029937 [exp] 86 / 9e-19 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024000 [exp] 250 / 4e-82 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1) Potri.001G423500 [exp] 96 / 2e-23 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2) Potri.018G083500 [exp] 96 / 3e-23 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2) Potri.013G102100 [exp] 91 / 3e-21 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1) Potri.013G023900 [exp] 91 / 2e-20 AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 77 / 1e-15 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G023900 [exp] 45 / 3e-05 AT1G54870 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10041218 pacid=23179760 polypeptide=Lus10041218 locus=Lus10041218.g ID=Lus10041218.BGIv1.0 annot-version=v1.0 ATGGCATCTGCAGTAGTTAGAAGAGCCAAGGCGTCGGCATTCAGGTCGGTGGTCGACGGTCTCCGAGTGGCTGGATCATCGAGGTCCTACGCCAAGGTTG CTGTTGGGGCTGATCTAGTATCGGCTGCAGCCGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGCTCCTACACCAAGGTTGCTGT TGGGGCTGATTTAGTATCGCCCTCCCCCGATGTCGCCCTCCAGAAAGCTCGCACCTGGGACGAAGGCGTCTCTTCCAAATTCTCCACTACCCCTCTCAAA GACATTTTCAAGGGCAAGAAAGTTGTCATCTTTGGTCTTCCAGGTGCATACACAGGTGTTTGCTCGCAGCAGCATGTTCCTAGTTACAAGAACAACGCAG ACAAGTTCAAGGCTAAAGGGATTGATTCGATCATTTGCGTGTCCGTTAACGACCCGTATGTGATGAATGGTTGGGCAGAGAAACTTCAAGCTAAAGATGA TCTCGAATTCTACGGAGACTTTGATGGGAAGTTCCACAAGAGCTTGGAGTTAACTAAGGATCTCTCTGGTGCTTTGCTTGGACCTCGCTCTGAAAGATTA CAGAAAAGAGTAAGAGAGGTGGCGTTCGGAAGCAGTAGTTGTGACTGCGGCTCAAAGTTCCCACCACAGCATCAGGAAGAGCAGCCTGGCAAGGAATACT TGATGCACCCTTTGCCTCAGCCACTCAACCCTGACTGCAAACCCTCCAACAAACTCCTTGGGAAGGTGGCTCTAGTGACAGGAGGAAACTCGGGGATAGG TAGATCGGTGTGTCTACACTTCGCAAATGGAAGGAGCGACCGTAGGATTCAGTTACGTCAAAGGAGTAGAAGATATCGACAAGAATGA
AA sequence Show only first row Show all	>Lus10041218 pacid=23179760 polypeptide=Lus10041218 locus=Lus10041218.g ID=Lus10041218.BGIv1.0 annot-version=v1.0 MASAVVRRAKASAFRSVVDGLRVAGSSRSYAKVAVGADLVSAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYTKVAVGADLVSPSPDVALQKARTWDEGVSSKFSTTPLK DIFKGKKVVIFGLPGAYTGVCSQQHVPSYKNNADKFKAKGIDSIICVSVNDPYVMNGWAEKLQAKDDLEFYGDFDGKFHKSLELTKDLSGALLGPRSERL QKRVREVAFGSSSCDCGSKFPPQHQEEQPGKEYLMHPLPQPLNPDCKPSNKLLGKVALVTGGNSGIGRSVCLHFANGRSDRRIQLRQRSRRYRQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	3.5	0.8155
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	4.9	0.8010
AT1G47820			unknown protein		Lus10035088 [exp]	4.9	0.8193
AT5G16660			unknown protein		Lus10026866 [exp]	5.5	0.8420
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	5.8	0.8281
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	6.7	0.8139
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Lus10019163 [exp]	7.1	0.7856
AT2G39960			Microsomal signal peptidase 25...		Lus10009885 [exp]	7.9	0.7531
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10037502 [exp]	8.5	0.7620
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	8.9	0.7660

Compare expression of checked genes

Lus10041218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.