Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19150 482 / 8e-171 pfkB-like carbohydrate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021933 [exp] 700 / 0 AT5G19150 504 / 4e-180 pfkB-like carbohydrate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203600 [exp] 536 / 0 AT5G19150 509 / 0.0 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF01256 [flax] [poplar] Carb_kinase Carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10041220 pacid=23179559 polypeptide=Lus10041220 locus=Lus10041220.g ID=Lus10041220.BGIv1.0 annot-version=v1.0 ATGTTAATTAGGCATGGCGTAAATCAGCTAACTTGGTCGAGTATCGCCCAGCCTTCGGCAGCTGTTGTGAGAAGACAGAGTTTCTTGATAAGGTGTCTGG GAGGAAGTCACAAAGTCCATACTGCAATGCAAGGTTCTGAGGCTGACGCTGAGACCATTTTGAGAGCAATTACTCCTACTTTAGACCCAGTTAGATACAA GGGCCAAGCAGGTAACAAAGATTGTTGCTTTGATTTTTCTGATTTTGACTTGCTTTGCTGGGGCATTGTGGGTTCTTACTGTTTTCCTGCAAACTGGGTT GGATTGTTCTCCCCAGGGAAAATAGCTGTGATTGGAGGGTGCCGAGAGTATACAGGAGCTCCTTATTTTGCTGCTATTTCAGCCTTAAAAATTGGTGCAG ATTTGTCTCATGTGTTCTGCACCAAAGATGCTGCTCCTGTTATCAAGAGCTATAGTCCTGAGTTGATCGTTCATCCGGTTCTCGAGGAGTCTTATAGTGT AAGGGAGGAGGAAAGATCAAATGTGGCAGCAAAAGTTGTTGCTGAGGTTGATACATGGATGGAAAGATTTGATTGTCTTGTGATCGGACCTGGTCTCGGA AGGGATCCATTTCTTCTGGACTGTGTCGGTGCGATCATGAAGCAGGCGAGGCTTTCAAATGTTCCACTTATTGTAGACGGGGATGGACTCTTTCTTATAA CAAACAATGTTGATCTTGTTCGTGGTTATCCCTTGGCTGTTCTGACGCCAAATGTGAACGAATACAAACGCCTGGTTCAGAAGATTCTCGGATATGAAGT TGATGATGCTGATCCACATGGACAGTTGTTGTCCCTTGCAAAACAAATCGGTGGTGTTACGATTCTGCGGAAAGGAAAATCCGACCTCGTCAGTGACGGT GAGATAGTGAAATCAGTGAGTATTTACGGTTCGCCTAGACGATGTGGCGGCCAGGGTGATATTCTCTCTGGAAGTGTTGCAGTATTTCTATCCTGGGCAC GCCAACAAATTTCAGATGGTGAAGGTCATTTAAGCAAGAGCCCGACAAATCCAACCGTTCTGGGATGCATTGCCGGGTCAGCTTTACTTCGAAAGGCTGC ATCTCTCGCTTTCGAGAACAGAAAAAGAGCGACCCTAACCTCCGATATCATTGAATGCCTTGGAAAGAGTATGGAAGATATCTGCCCAGCATCTTGA
AA sequence Show only first row Show all	>Lus10041220 pacid=23179559 polypeptide=Lus10041220 locus=Lus10041220.g ID=Lus10041220.BGIv1.0 annot-version=v1.0 MLIRHGVNQLTWSSIAQPSAAVVRRQSFLIRCLGGSHKVHTAMQGSEADAETILRAITPTLDPVRYKGQAGNKDCCFDFSDFDLLCWGIVGSYCFPANWV GLFSPGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPVLEESYSVREEERSNVAAKVVAEVDTWMERFDCLVIGPGLG RDPFLLDCVGAIMKQARLSNVPLIVDGDGLFLITNNVDLVRGYPLAVLTPNVNEYKRLVQKILGYEVDDADPHGQLLSLAKQIGGVTILRKGKSDLVSDG EIVKSVSIYGSPRRCGGQGDILSGSVAVFLSWARQQISDGEGHLSKSPTNPTVLGCIAGSALLRKAASLAFENRKRATLTSDIIECLGKSMEDICPAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10041220 [exp]	0	1
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	4.1	0.9155
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	10.4	0.8635
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	13.0	0.8664
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	14.1	0.8785
AT2G45320			unknown protein		Lus10000786 [exp]	17.0	0.8703
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	17.8	0.8709
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	25.6	0.8604
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	27.7	0.8670
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	28.9	0.8662
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	30.8	0.8428

Compare expression of checked genes

Lus10041220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.