Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08970 224 / 7e-74 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT1G54830 221 / 5e-73 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT1G56170 199 / 1e-64 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT5G63470 196 / 7e-63 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT3G48590 193 / 1e-61 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G50480 138 / 1e-40 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G27910 122 / 2e-34 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1) AT5G50490 109 / 1e-29 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G50470 108 / 3e-29 CCAAT NF-YC7 "nuclear factor Y, subunit C7", nuclear factor Y, subunit C7 (.1) AT5G38140 94 / 1e-23 CCAAT NF-YC12 "nuclear factor Y, subunit C12", nuclear factor Y, subunit C12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021934 [exp] 384 / 6e-137 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10029939 [exp] 234 / 1e-77 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 230 / 5e-76 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10022444 [exp] 196 / 6e-62 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10016750 [exp] 193 / 2e-61 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10024515 [exp] 116 / 5e-33 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10008013 [exp] 112 / 4e-31 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10026780 [exp] 60 / 2e-10 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10030832 [exp] 54 / 4e-09 AT5G43250 147 / 3e-46 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G032301 [exp] 289 / 3e-99 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.008G203500 [exp] 288 / 9e-99 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G035800 [exp] 259 / 4e-87 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.013G025000 [exp] 250 / 3e-84 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G094900 [exp] 206 / 3e-66 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.007G070900 [exp] 205 / 4e-66 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.015G097400 [exp] 194 / 5e-62 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.012G098500 [exp] 189 / 5e-60 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.017G120000 [exp] 120 / 2e-33 AT1G56170 127 / 1e-36 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.003G124500 [exp] 114 / 2e-32 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10041221 pacid=23179921 polypeptide=Lus10041221 locus=Lus10041221.g ID=Lus10041221.BGIv1.0 annot-version=v1.0 ATGGATCAGCAAGGGCAGCCTAATGAATCAACTGGAGTTGGAACTACTGCTCCAGTTCCTTATGGTATCGCTCCGTACCAGCATAATCAGATGATGGTTC AGTCTCCAACTCAGCAGTTAGCACAGCAACACCAACTGGCATACCAGCACATTCACCAGCAGCAGCAGTTGCAGCAACAGCTCCAGACCTTTTGGGCCGA CCAGTACCAAGAAATCACCCAGACTACAGATTTCAAAAACCACAGCTTGCCCCTGGCCAGGATCAAGAAGATCATGAAGGCTGACGAGGATGTGAGAATG ATCTCTGCCGAAGCTCCAGTTATCTTCGCCAGAGCCTGCGAGATGTTCATACTGGAACTAACATTGCGGTCGTGGAACCACACAGAGGAGAACAAGAGGA GGACCCTTCAGAAGAACGACATTGCTGCCGCCATCACAAGGACCGATATCTTCGACTTCCTTGTAGATATCGTCCCGAGAGAGGACTTGAAGGAGGAGAT TCTCGCATCTGTTCCTAGAGGCAGCCTTCCTGTTGGTGGTTCGGCTGAACCAATGCCTTACTATTACTTGCCGCCACCTGCTGCTGCTGGGATGAGCGTA GGAAGGCCAGTCGTCGATCAAGCTCTATATGGCCAACCTCCTTACATGCCTCAGCAAATGTGGCCACATCAGCAAGAGGAAGAACAGCCACCTGCTGCAG ATTCTTGA
AA sequence Show only first row Show all	>Lus10041221 pacid=23179921 polypeptide=Lus10041221 locus=Lus10041221.g ID=Lus10041221.BGIv1.0 annot-version=v1.0 MDQQGQPNESTGVGTTAPVPYGIAPYQHNQMMVQSPTQQLAQQHQLAYQHIHQQQQLQQQLQTFWADQYQEITQTTDFKNHSLPLARIKKIMKADEDVRM ISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKEEILASVPRGSLPVGGSAEPMPYYYLPPPAAAGMSV GRPVVDQALYGQPPYMPQQMWPHQQEEEQPPAADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10041221 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	5.7	0.9620
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	9.7	0.9614
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	11.7	0.9534
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10030723 [exp]	12.0	0.9463
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	12.2	0.9555
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	12.8	0.9552
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	13.5	0.9521
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	14.0	0.9541
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	15.5	0.9501
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011731 [exp]	18.0	0.9345

Compare expression of checked genes

Lus10041221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.