Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06100 248 / 8e-82 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT4G18910 157 / 3e-46 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT5G37820 152 / 1e-44 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT1G80760 150 / 3e-43 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G19030 149 / 5e-43 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37810 148 / 1e-42 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT1G31885 148 / 2e-42 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT4G10380 147 / 2e-42 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT2G34390 125 / 8e-34 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G16240 79 / 7e-17 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021935 [exp] 278 / 1e-94 AT3G06100 195 / 3e-62 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) Lus10024066 [exp] 151 / 7e-44 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10010153 [exp] 150 / 4e-43 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10029274 [exp] 147 / 3e-42 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10017358 [exp] 147 / 4e-42 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10033268 [exp] 145 / 1e-41 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10035999 [exp] 135 / 8e-38 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10041674 [exp] 129 / 1e-36 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10020929 [exp] 132 / 2e-36 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203300 [exp] 320 / 8e-110 AT3G06100 261 / 1e-86 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) Potri.011G072100 [exp] 159 / 6e-47 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 154 / 2e-45 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 152 / 2e-44 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G083300 [exp] 150 / 7e-44 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G128200 [exp] 148 / 6e-43 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.001G455000 [exp] 147 / 3e-42 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.001G046800 [exp] 146 / 1e-41 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 145 / 1e-41 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.011G146900 [exp] 144 / 6e-41 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10041222 pacid=23179655 polypeptide=Lus10041222 locus=Lus10041222.g ID=Lus10041222.BGIv1.0 annot-version=v1.0 ATGACAGGTGTGATTCTTAAAATGAAGCAGCTACTGGATCAACATCCCTCCCCTCCTGCACCCAGCAATGGCTCCGTCTCGTCTGAGGTCGCGGGTTCGC ATCTTAAAGACTTTTGGTACTTTGTCAAGGGAATGGACTTCAACCCGGCTCGAATGATTATGGCAGAAATGGTGGGAACATTCATACTAATGTTCTGCGT ATGCGGGATCATAGCGAGCACCCAGATACTGAAAGGCCAAGTTGGACTTCTGGAGTATGCTTCCACGGCGGGATTGACAGTAGTGGTTCTCATTTTCTCT ATAGGATCCATCTCCGGCGCCCATGTCAACCCTGCTGTTACGATTGCTTTCGCCACGTTTGGTCATTTCCCCTGGCCTAGGGTCCCATTCTACATATTGT CGCAAATAATCGGTTCGATTCTTGCGACATACATTGGGAAATCAGTATACGGGATCGACCCGGATCTTATGGCTACAAGACCACTTCAGAACTGCGCTTC TTCCTTTTGGGTTGAGTTCATAGCCACTTTTATCATCATGTTCGTTGCCGCTGCATTGACCTTTCATGCCCAGTCTGTGGGTTACTTGTCAGGATTGATC ATTGGGATTTCCATCGCGCTCGCGGTGCTCATTACAGGGCCGATTTCGGGGGGTTCGATGAACCCAGCAAGGTCGCTGGGTCCAGCGATCGTGGCCTGGA ACTTTAAGGGCGTATGGGTTTATATAACAGCGCCGATTGGTGGAGCTCTGGCAGGGGCGATGATGTTCAATGTGCTGAACTTGCGGCAGCAGAGTAGTAG CCTACAGCAGCCTTCGTGTACCGCCGCGTCATCTGCTTCTGCTGATACTGGACTGCTGGTTCACACCATAGCTTTTGCCGATGGCTGA
AA sequence Show only first row Show all	>Lus10041222 pacid=23179655 polypeptide=Lus10041222 locus=Lus10041222.g ID=Lus10041222.BGIv1.0 annot-version=v1.0 MTGVILKMKQLLDQHPSPPAPSNGSVSSEVAGSHLKDFWYFVKGMDFNPARMIMAEMVGTFILMFCVCGIIASTQILKGQVGLLEYASTAGLTVVVLIFS IGSISGAHVNPAVTIAFATFGHFPWPRVPFYILSQIIGSILATYIGKSVYGIDPDLMATRPLQNCASSFWVEFIATFIIMFVAAALTFHAQSVGYLSGLI IGISIALAVLITGPISGGSMNPARSLGPAIVAWNFKGVWVYITAPIGGALAGAMMFNVLNLRQQSSSLQQPSCTAASSASADTGLLVHTIAFADG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06100		NIP7;1, NLM8, N...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10041222 [exp]	0	1
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10028141 [exp]	5.1	0.8243
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	21.0	0.7713
AT5G03260		LAC11	laccase 11 (.1)		Lus10026512 [exp]	21.2	0.7953
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	41.6	0.7239
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	48.0	0.7315
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	64.4	0.7229
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	84.5	0.7026
AT5G07475			Cupredoxin superfamily protein...		Lus10012165 [exp]	103.1	0.6983
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	159.2	0.6607
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	199.6	0.6438

Compare expression of checked genes

Lus10041222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.