Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 502 / 7e-177 Eukaryotic aspartyl protease family protein (.1) AT1G03230 488 / 3e-171 Eukaryotic aspartyl protease family protein (.1) AT5G19120 211 / 6e-64 Eukaryotic aspartyl protease family protein (.1) AT5G19110 189 / 1e-55 Eukaryotic aspartyl protease family protein (.1) AT5G19100 188 / 3e-55 Eukaryotic aspartyl protease family protein (.1) AT5G48430 168 / 2e-47 Eukaryotic aspartyl protease family protein (.1) AT5G10770 70 / 1e-12 Eukaryotic aspartyl protease family protein (.1) AT3G59080 69 / 3e-12 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 68 / 4e-12 Eukaryotic aspartyl protease family protein (.1) AT2G39710 65 / 5e-11 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021938 [exp] 717 / 0 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 667 / 0 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 649 / 0 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 565 / 0 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 464 / 3e-163 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 463 / 4e-162 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 414 / 3e-142 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 285 / 2e-91 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10034035 [exp] 253 / 3e-79 AT1G03220 260 / 2e-82 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203200 [exp] 590 / 0 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 545 / 0 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 514 / 0 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 322 / 3e-106 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 311 / 8e-102 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 309 / 5e-101 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 304 / 5e-99 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 301 / 7e-98 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 299 / 2e-97 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 297 / 2e-96 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041224 pacid=23179995 polypeptide=Lus10041224 locus=Lus10041224.g ID=Lus10041224.BGIv1.0 annot-version=v1.0 ATGGATCTTCCTTGTAGTTGTAGCAGCTGCAGCATCTACCTTCTCTTTTCATTTCTTCTCTTTATCTCCATCACAACATCTGAAGCACAATCATCATTTA AGCCGAAAGCACTTGTCCTTCCAGTTTCCAAAGACCAAACAACTCTCCAATACACTGCCCAAATCAACCAAAGAACTCCTTTCGTCCCAGTTAAGCTAAC TGTTGATCTTGGTGGGCGGTACCTCTGGGTTGACTGTGAACAAGGCTATGTCTCTTCATCCTACAAGCCTATTCGTTGCGAATCGGCTCAATGCAAACTC GCAAACTCAAAGAGCTGCACCACGGAATGCTACTCGAAACCCAAACCAGGCTGCAACAATAACACCTGTGGCCTTTTTCCTGATAATCCAATGACACAGT ACGTTTCCTCTGGCGACCTCGGCCAGGATGTTGTGGCCATTCAATCAACTGATGGATCGAATCCCGGAATAGTCGCCAAAGTTCCAAACTTTCTCTTCAG CTGCGGAGCCACATACTTGCTAAAGGGACTTGCTAAAGGTGTTGAAGGTATGGCTGGACTTGGGAGGACTAAAATCTCAATCCCATCTCAATTCTCTGCT GCTTTCAAATTTGACAGGAAGTTTGCTGTTTGTTTGAGCTCATCAACAAACTCCAGAGGGGTTGTCTTCTTTGGAAACGGTCCTTATGTTCTTCTGCCAA ATATTGATGTCTCTGAGTCACTCATTTCCACCCCCTTGATTTTGAACAAAGTTAGTACTTACTCCGAGAGTGAACCTTCCTCTGACTATTTCATTGGAGT TAAGTCAATCAAGATCAATGGGGATGTTACTGTTCCAGTGAACACAACACTGTTGAAAATCAACAAAGAAGGGTTTGGTGGGACAAAAATCAGCACTATT CATCCCTACACTGTACTTGAATCTTCCATTCACAAAGCTCTCATTGATGCTTTCGCTAGACAGCTTTCTAAAGTCCCTAGAGTTGCACCCGTTGCACCTT TCGATTTGTGTTTCGACTCGACCGGGATTGGAAGCACTCGAGTTGGTCCTGCAGTGCCTCAGATCGATCTGGTGTTGCAGAGCAGCAGTGTGATTTGGAG TATATTTGGTGCCAACTCTATGGTTCAAGTGAAAAAAGATGTTCTTTGCCTTGGTTTCATAGACGGTGGGGTTAATCCTAGGACTTCTATTGTCATTGGA GGGCATCAGTTGGAGGATAACCTGCTGCAGTTTGATGTTGCTAATTCAAGACTTGGGTTCAGCTCTTCATTGCTGTCCAGGCAAACTACTTGTGCAAACT TCAACTTTACCTCTGAGTTTAACAAAGAATGGGGGGCTTATGCAATGTGA
AA sequence Show only first row Show all	>Lus10041224 pacid=23179995 polypeptide=Lus10041224 locus=Lus10041224.g ID=Lus10041224.BGIv1.0 annot-version=v1.0 MDLPCSCSSCSIYLLFSFLLFISITTSEAQSSFKPKALVLPVSKDQTTLQYTAQINQRTPFVPVKLTVDLGGRYLWVDCEQGYVSSSYKPIRCESAQCKL ANSKSCTTECYSKPKPGCNNNTCGLFPDNPMTQYVSSGDLGQDVVAIQSTDGSNPGIVAKVPNFLFSCGATYLLKGLAKGVEGMAGLGRTKISIPSQFSA AFKFDRKFAVCLSSSTNSRGVVFFGNGPYVLLPNIDVSESLISTPLILNKVSTYSESEPSSDYFIGVKSIKINGDVTVPVNTTLLKINKEGFGGTKISTI HPYTVLESSIHKALIDAFARQLSKVPRVAPVAPFDLCFDSTGIGSTRVGPAVPQIDLVLQSSSVIWSIFGANSMVQVKKDVLCLGFIDGGVNPRTSIVIG GHQLEDNLLQFDVANSRLGFSSSLLSRQTTCANFNFTSEFNKEWGAYAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041224 [exp]	0	1
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	2.4	0.8581
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Lus10024262 [exp]	6.2	0.7953
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10022025 [exp]	11.9	0.8667
					Lus10018751 [exp]	17.5	0.7769
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	19.0	0.7850
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10013330 [exp]	28.2	0.8305
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	31.8	0.7953
					Lus10008695 [exp]	33.5	0.7953
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	33.8	0.8435
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	39.5	0.8189

Compare expression of checked genes

Lus10041224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.