Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 348 / 2e-117 Eukaryotic aspartyl protease family protein (.1) AT1G03230 335 / 2e-112 Eukaryotic aspartyl protease family protein (.1) AT5G48430 154 / 1e-42 Eukaryotic aspartyl protease family protein (.1) AT5G19120 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) AT5G19100 148 / 9e-41 Eukaryotic aspartyl protease family protein (.1) AT5G19110 144 / 3e-39 Eukaryotic aspartyl protease family protein (.1) AT2G39710 59 / 3e-09 Eukaryotic aspartyl protease family protein (.1) AT5G10770 54 / 9e-08 Eukaryotic aspartyl protease family protein (.1) AT2G42980 52 / 5e-07 Eukaryotic aspartyl protease family protein (.1) AT3G20015 44 / 0.0001 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021936 [exp] 522 / 0 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 473 / 7e-167 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 473 / 4e-166 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 440 / 5e-153 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 424 / 4e-148 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 297 / 1e-97 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 293 / 1e-95 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10000080 [exp] 246 / 2e-81 AT1G03230 102 / 5e-28 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 218 / 3e-66 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203200 [exp] 428 / 1e-148 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 411 / 4e-142 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 380 / 7e-130 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 249 / 2e-78 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 248 / 2e-78 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 241 / 1e-75 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 240 / 6e-75 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 226 / 7e-70 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 219 / 7e-67 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 215 / 1e-65 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041225 pacid=23179556 polypeptide=Lus10041225 locus=Lus10041225.g ID=Lus10041225.BGIv1.0 annot-version=v1.0 ATGGCTCTTGGTTGTAGCTGCATTTTCCTTGTCTCAATTTCTTGTCTTCTGTTCTCCATCACAACATCTGAAGCACAATCATCATTCAAGCCTAAAGCAC TCGTCCTTCCACTTTCCAAAGACCCATCAACTCTCCAACACATTACCCAAATCAACCAAAGAACCCCTCTCGTCCCAGTCAAGCTAACTGTTGATCTTGG TGGGAAGTACCTCTGGGTTGACTGTGAACAAGGCTATGTCTCATCATCCTACAAGCCTGCTCGCTGCGGATCGGGCAATGCTCACTTGCAAAGTCAAGGA CCTGCAGCAACAATACCTGTGAACTTTTGCCTGACAACACGGTCACACGCACTTTGTGGGACAAATTTAGCAGAGGGACTTGCTAAAGGTGTTGTAGGTA TGGCTGGACTTGGGAGGGATAAAATCTCAACCACATCTCAATTCTCTGATGCTTTCAGTTTGGACAGCAAGTTTGCAATCTGTTTGAGCTCTTCGAAAGG AGTTGTCTTTTTCGGAGATGGTCCTTATGCTCTTGGACCAAATGTTGATGTCTCAAAGTCACTGACTTACACACCATTGATTTTCAACAAATTTAGCACA GGTTCTGCTTCTTTCTTCAAAGGTGATGCTTCCTCTGACTATTTCATTAGAGTTAAGTCAATCAAGATCAATGGCAAGTTTAAAGTTCTACTGAACACAA ATAAGCTAAAGATCGACAAACTAGGGAGCGGTGGGACCAAGATCAGCACGACTCAACCTTACACCCTACTCGAGACTTCCATTCACAAAGCTCTCACTAA TGCTTTCGCGGGACAGCTGTCTAATAAAGTTCCTAGAGTTGCAGCGGTTGCACCGTTCGATTTGTGTTTCGACTCGACTGAGATTGGAAGCACTCGAGTC GGTCCTGCTGTGCCTCGGATCGATCTGGTGCTGCATAGAAGCAATGTGGTGTGGAGTATCTTTGGTGCCAACTCTATGGTTCAAGTGAAAAAAGGCGTTC TTTGCCTTGGTTTTGTAGACGGTGGGGCTAATCCCAGGACCAATATTATCATCGGAGCGCATCAGTTGGAGGATAATTTGTTGCAGTTTGATGTTGCTAA GTCAAGATTTGGGTTCAGCTCTTCATTGCTGTTCAGGCAAACTAGCTGTGCCAACTTCAACCTTACCCCTACAGCTTAA
AA sequence Show only first row Show all	>Lus10041225 pacid=23179556 polypeptide=Lus10041225 locus=Lus10041225.g ID=Lus10041225.BGIv1.0 annot-version=v1.0 MALGCSCIFLVSISCLLFSITTSEAQSSFKPKALVLPLSKDPSTLQHITQINQRTPLVPVKLTVDLGGKYLWVDCEQGYVSSSYKPARCGSGNAHLQSQG PAATIPVNFCLTTRSHALCGTNLAEGLAKGVVGMAGLGRDKISTTSQFSDAFSLDSKFAICLSSSKGVVFFGDGPYALGPNVDVSKSLTYTPLIFNKFST GSASFFKGDASSDYFIRVKSIKINGKFKVLLNTNKLKIDKLGSGGTKISTTQPYTLLETSIHKALTNAFAGQLSNKVPRVAAVAPFDLCFDSTEIGSTRV GPAVPRIDLVLHRSNVVWSIFGANSMVQVKKGVLCLGFVDGGANPRTNIIIGAHQLEDNLLQFDVAKSRFGFSSSLLFRQTSCANFNLTPTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041225 [exp]	0	1
AT1G03230			Eukaryotic aspartyl protease f...		Lus10000080 [exp]	1.0	0.9595
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	3.9	0.8057
					Lus10026392 [exp]	4.2	0.7975
AT5G39670			Calcium-binding EF-hand family...		Lus10012199 [exp]	4.5	0.8266
					Lus10038613 [exp]	9.4	0.8071
					Lus10005948 [exp]	13.0	0.7671
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	15.0	0.8134
AT3G47510			unknown protein		Lus10019094 [exp]	15.5	0.7844
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10037257 [exp]	16.9	0.7754
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	17.7	0.7255

Compare expression of checked genes

Lus10041225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.