Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 363 / 8e-123 Eukaryotic aspartyl protease family protein (.1) AT1G03230 355 / 6e-120 Eukaryotic aspartyl protease family protein (.1) AT5G19110 103 / 2e-24 Eukaryotic aspartyl protease family protein (.1) AT5G19120 98 / 3e-22 Eukaryotic aspartyl protease family protein (.1) AT5G19100 86 / 4e-18 Eukaryotic aspartyl protease family protein (.1) AT5G48430 85 / 9e-18 Eukaryotic aspartyl protease family protein (.1) AT3G25700 55 / 5e-08 Eukaryotic aspartyl protease family protein (.1.2) AT5G10770 53 / 2e-07 Eukaryotic aspartyl protease family protein (.1) AT4G35880 50 / 2e-06 Eukaryotic aspartyl protease family protein (.1) AT3G51330 49 / 4e-06 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021938 [exp] 574 / 0 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 564 / 0 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 465 / 3e-163 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 462 / 1e-161 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 326 / 2e-109 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 297 / 1e-97 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 274 / 5e-88 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 164 / 1e-45 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10010278 [exp] 140 / 4e-38 AT1G03220 259 / 1e-83 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203200 [exp] 421 / 1e-145 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 378 / 1e-128 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 375 / 2e-127 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 223 / 5e-68 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 204 / 6e-61 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 200 / 2e-59 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 199 / 5e-59 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 197 / 2e-58 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 195 / 2e-57 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 195 / 2e-57 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041226 pacid=23179632 polypeptide=Lus10041226 locus=Lus10041226.g ID=Lus10041226.BGIv1.0 annot-version=v1.0 ATGCCATGCACTGATCCACAGGCACATAGTCCACTTAAGCATCATCCAGCTCTGCGTAGCGCGACAGTCGACACTAATGGTGGTTTGGATAGCTCATCAG CTGGTCAATACCACAGAGGAAACCTGACCGTTACCAAAGACTCAAAAACTCTCCAATACACTGCCATAATCAACCAAAGAACCCCTTTCGTCCCACTCAA CCTAACTCTCGATCTTGGTGGCCGCTACTTCTGGGTTGACTGTGAACAAGGCTACGTCTCATCATCCTACAAGCCTATTCGTTGCGAATCGGCTCCATGC AGTCTCTCAAACTCAAAGAGCTGCACCACTGAATGCTACTCGAAACCCAAACCAGGCTGCAACAACAATACCTGTGGCCTTTTCCCTGATAACCCAATGA CACGGTCCGTTTCCTCTGGAGACCTCGGCCAGGATACTGTAGCCATTCAATCAACTGATGGATCGAATCCCGGAATAGTCGCCAAAGTTCCCAACTTTCT CTTCAGTTGTGGAGCCACATACTTACTGAAGGGACTTTCTCAAAGTGTTAAAGGTATGGCTGGACTTGGCAGGACTAAAATCTCATTCCCATCTCAATTC TCTGCTGCTTTGAGTTTCGACAGAAAGTTTGCTCTTTGTTTGAGCTCCTCCACAATTTCCAGAGGGGTTGTCTTCTTTGGAAACGGTCCTTATGTTCTTC TGCCAAATATTGATGTCTCAAAGTCACTTATTTCCACCCCCTTGATTTTGAACAAAGTTAGTACTTACTCCGAGAGTGAACCTTCCCCTGACTATTTCAT TGGGGTTAAGTCAATCAAGATTAACGGCGATGTTACTGTTCCGTGCAATCCAATACTGCTGAAAATCAACAAAGAAGGGTTTGGTGGGACAAAGATCAGC ACTATTTTCGATGTGTGTCTCGACTCGACTGAGATTGGAAGCACTCGAGTCGGTCCTGCTGTGCCTCGGATCGATCTGGTGCTGCATAGAAGCAACGGTG GAGTTAATCCCAGGACTTCTATAGTCATTGGAGGGCATCAGTTGGAGGATAATTTGCTGCAGTTTGATGTTGCTAATTCAAGACTTGGGTTCAGCTCTTC ATTGCTGTCCAGGCAAACTAATTGTGCAAACTTCAACCTTACCCCTGTGTTTGGCAAGGAAATGGGGGGTTTGATCTGGTGGTGTGGTGTGAGGGGAAGG CGGGCTGTTTGTTTGGGGGGGGGGGGGGGTGAGATTCCAGTTTAG
AA sequence Show only first row Show all	>Lus10041226 pacid=23179632 polypeptide=Lus10041226 locus=Lus10041226.g ID=Lus10041226.BGIv1.0 annot-version=v1.0 MPCTDPQAHSPLKHHPALRSATVDTNGGLDSSSAGQYHRGNLTVTKDSKTLQYTAIINQRTPFVPLNLTLDLGGRYFWVDCEQGYVSSSYKPIRCESAPC SLSNSKSCTTECYSKPKPGCNNNTCGLFPDNPMTRSVSSGDLGQDTVAIQSTDGSNPGIVAKVPNFLFSCGATYLLKGLSQSVKGMAGLGRTKISFPSQF SAALSFDRKFALCLSSSTISRGVVFFGNGPYVLLPNIDVSKSLISTPLILNKVSTYSESEPSPDYFIGVKSIKINGDVTVPCNPILLKINKEGFGGTKIS TIFDVCLDSTEIGSTRVGPAVPRIDLVLHRSNGGVNPRTSIVIGGHQLEDNLLQFDVANSRLGFSSSLLSRQTNCANFNLTPVFGKEMGGLIWWCGVRGR RAVCLGGGGGEIPV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041226 [exp]	0	1
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016187 [exp]	1.0	0.8681
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	3.5	0.8047
					Lus10027544 [exp]	9.5	0.7418
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	11.8	0.7782
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10017529 [exp]	35.1	0.6948
AT1G10522			unknown protein		Lus10030652 [exp]	41.5	0.6632
AT2G30300			Major facilitator superfamily ...		Lus10015470 [exp]	63.2	0.6784
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	103.5	0.6587
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	173.8	0.6548

Compare expression of checked genes

Lus10041226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.