Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23610 237 / 6e-80 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 187 / 1e-60 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT5G23720 95 / 1e-22 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G55270 84 / 6e-19 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT2G04550 76 / 2e-16 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT5G56610 46 / 3e-06 Phosphotyrosine protein phosphatases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021940 [exp] 328 / 3e-116 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 155 / 1e-48 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 89 / 1e-20 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 89 / 1e-20 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 89 / 2e-20 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 87 / 1e-19 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10030324 [exp] 81 / 8e-18 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10000921 [exp] 80 / 9e-18 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Lus10003291 [exp] 81 / 1e-17 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033000 [exp] 254 / 3e-87 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 96 / 5e-23 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.015G105000 [exp] 91 / 4e-21 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.008G049900 [exp] 87 / 1e-19 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G210900 [exp] 86 / 2e-19 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.014G160500 [exp] 81 / 2e-18 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.016G035700 [exp] 69 / 1e-13 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.006G040300 [exp] 68 / 2e-13 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.014G045500 [exp] 49 / 5e-07 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 45 / 9e-06 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10041227 pacid=23179716 polypeptide=Lus10041227 locus=Lus10041227.g ID=Lus10041227.BGIv1.0 annot-version=v1.0 ATGGCTCAGTTTGATGATGTGATGAAGAACCAAATTGCTGCGATTTTGAGGGTTATAAATTACTCAAAGTGCTTTAAAGAGGACAACATTCCATGCCTCA TTAAAGAGGGATTGTTCTTGGGGTCTGTTGGTGCTGCTAACAACAAGAATGTACTGAAAAGCAAGAACGTCACTCACATATTAACGGTAGCAAATTCGAT AGCTCCCGTCTATCCCAATGATTTTGTATATAAGGTTATTGCAGTTGCGGATAGAGAAGAAACAAATTTGAGACAGTATTTTGAAGAGTGCATCAATTTC ATTGATGAAGCCAAAAGACAAGGTGGTGGTGTTTTGGTACATTGCTTTGTTGGAAGGTCCAGGAGGCATCCTGGTGTTGTTTCCAGTGTCACGATAATTC TTGCCTACCTCATGAAGAAGCATGGCATGACAGTATCTCAAGCTCTAGAACATATAACGTCTAGAAGACCTCAAGCATCTCCGAATTTCGGCTTCGTTTC GCAGCTCCACGAGTATGAGAGATTGCTTAAAGACAATTGTGAGAGAGACCAGCATCGGCAGCACGATGAGGCGACACCTGAATTCAGCAGCAGTCGAGAT CTAAGGAATGTACCATGA
AA sequence Show only first row Show all	>Lus10041227 pacid=23179716 polypeptide=Lus10041227 locus=Lus10041227.g ID=Lus10041227.BGIv1.0 annot-version=v1.0 MAQFDDVMKNQIAAILRVINYSKCFKEDNIPCLIKEGLFLGSVGAANNKNVLKSKNVTHILTVANSIAPVYPNDFVYKVIAVADREETNLRQYFEECINF IDEAKRQGGGVLVHCFVGRSRRHPGVVSSVTIILAYLMKKHGMTVSQALEHITSRRPQASPNFGFVSQLHEYERLLKDNCERDQHRQHDEATPEFSSSRD LRNVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10041227 [exp]	0	1
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10032014 [exp]	3.9	0.7564
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10013190 [exp]	4.0	0.7603
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10012963 [exp]	5.2	0.7423
AT4G39235			unknown protein		Lus10004160 [exp]	6.8	0.7787
AT1G47790			F-box and associated interacti...		Lus10007606 [exp]	8.8	0.7407
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019449 [exp]	9.4	0.7562
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10018214 [exp]	14.1	0.7008
AT3G14430			unknown protein		Lus10030201 [exp]	16.6	0.7339
AT2G28940			Protein kinase superfamily pro...		Lus10040804 [exp]	21.0	0.7187
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	24.6	0.7512

Compare expression of checked genes

Lus10041227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.