Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06130 147 / 2e-40 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G19090 141 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G05220 111 / 2e-26 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G27690 102 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1) AT1G23000 100 / 5e-23 Heavy metal transport/detoxification superfamily protein (.1) AT1G56210 86 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 84 / 3e-18 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 66 / 8e-13 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 64 / 2e-11 Heavy metal transport/detoxification superfamily protein (.1) AT1G66240 60 / 4e-11 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032445 [exp] 119 / 4e-30 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10029942 [exp] 110 / 3e-26 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 110 / 6e-26 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10031514 [exp] 103 / 1e-23 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10031495 [exp] 92 / 2e-20 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 89 / 2e-19 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10009116 [exp] 80 / 7e-16 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10028529 [exp] 76 / 5e-15 AT1G23000 81 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 64 / 6e-12 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202800 [exp] 134 / 1e-34 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G128400 [exp] 114 / 5e-28 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 114 / 6e-28 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 100 / 7e-24 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 100 / 9e-24 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 97 / 1e-22 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G036300 [exp] 97 / 9e-22 AT3G06130 114 / 7e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.013G025300 [exp] 94 / 1e-20 AT3G06130 96 / 2e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G091700 [exp] 89 / 7e-20 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G026100 [exp] 87 / 6e-19 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10041228 pacid=23179814 polypeptide=Lus10041228 locus=Lus10041228.g ID=Lus10041228.BGIv1.0 annot-version=v1.0 ATGAGTAAAGAAGAGCTCTTAAAGATCCAGACTTGCGTCCTCAAAGTGAACATACACTGCGACGGTTGCAAGCACAAGGTCAAGAAGATCTTGCAGAAGA TCGACGGGGTGTTCAAGACCCAAATAGATTCAGAGCAGGGTAAAGTAACAGTATCAGGAAGCGTCGACCCTGTTCTTCTCATCAAGAAGCTTAACAAAGC AGGCAAACATGCCGAGCTCTGGGGCGCCCAGAAGCAAACTAACACCAACTATAATCCCAATCAGTTCAAAAGCATGCAATTTGACAATGGCAAAGCCCAG AAAGGCGGAGCCCAGAAAGGGGGAGGTGGCGGCGGTGGAGGTAACAACAACCACCACCACCCCAATAATCCGATCAAGGGCGGCGGCGGAGGTGGAGGTG GTATGCAGCTAAACCCTCAACAGCTCCAACAACTTAGCCCACAGCAGCTCCAGCAGCTCCAGCAGCTTCAGCAGATGAGGGGTGTACACGATCTGAAACT TCCTCCTCAATTGAAAGCTCTGAAAATGCCGATGCCGCTGCCGCAGCAACAACATCAGGTGCCGCCGCATCTTCAGCACCAGAATCAGAAGAATGCCCAG AAATCTGTGAAGTTTGCAGCCGATGAGGATGACGATTTTAGTGACGACGACTGCGATGATGATGATTTTGACGATGATGACTACGACGACGACGAATTTG ATGACGATGATGAAATGGAAACGGTTCCGTTCAATAAGCAGAAACCGATGATCGGAAATGGCGGCCACCCGGGAATGATGATGAACAAAGCCGGAGGGAT GATGATGCCGCCTCATCTTGGGCAGCACAATGGAGCTCCCGCCGGGAAGAAGGGCGGCGTCGGCGGCGGCGGTCTGGTTCCTGTTCAATTCAATAACGGT GGCGGTGGTGGGAAAAAAGGCGGAGGGAATCCTAATCCTAATCAGAATCAGAATGGAAAAGTAGGTGGCGGCGGCGGTGGTGGTGGAGGAAAGCCACAAG ACAAGAAAAATGGTGGCCACGGCGGTGGTGGAGGAAGCAACGGGAAGAACGCTCCCAACGGCAATAATGGCAGTGGCGACAAGGGTAATAACATCCACAT GGGCGGGGGTAAAAAGGGAAATAATGGTGGTGGTGGGAACAACTACGATTTTCGGAGCATGGGTGGACCCCATATGGGCCAAATGGGCGGGCGCGCCCCC GCGGGGGGCGGCCGCGGGTGCTCCTAG
AA sequence Show only first row Show all	>Lus10041228 pacid=23179814 polypeptide=Lus10041228 locus=Lus10041228.g ID=Lus10041228.BGIv1.0 annot-version=v1.0 MSKEELLKIQTCVLKVNIHCDGCKHKVKKILQKIDGVFKTQIDSEQGKVTVSGSVDPVLLIKKLNKAGKHAELWGAQKQTNTNYNPNQFKSMQFDNGKAQ KGGAQKGGGGGGGGNNNHHHPNNPIKGGGGGGGGMQLNPQQLQQLSPQQLQQLQQLQQMRGVHDLKLPPQLKALKMPMPLPQQQHQVPPHLQHQNQKNAQ KSVKFAADEDDDFSDDDCDDDDFDDDDYDDDEFDDDDEMETVPFNKQKPMIGNGGHPGMMMNKAGGMMMPPHLGQHNGAPAGKKGGVGGGGLVPVQFNNG GGGGKKGGGNPNPNQNQNGKVGGGGGGGGGKPQDKKNGGHGGGGGSNGKNAPNGNNGSGDKGNNIHMGGGKKGNNGGGGNNYDFRSMGGPHMGQMGGRAP AGGGRGCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	0	1
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	1.0	0.9209
AT1G76660			unknown protein		Lus10025171 [exp]	2.4	0.8937
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	3.0	0.8483
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	4.0	0.8704
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	4.6	0.8548
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	5.2	0.8778
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	6.3	0.8567
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	6.5	0.8556
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	8.1	0.8468
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	13.3	0.8492

Compare expression of checked genes

Lus10041228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.