Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23590 1450 / 0 MED33A, RFR1 REF4-related 1 (.1) AT2G48110 1192 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1) AT5G19070 140 / 2e-36 SNARE associated Golgi protein family (.1) AT1G03260 118 / 5e-29 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034021 [exp] 1957 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10004434 [exp] 1944 / 0 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10000663 [exp] 1332 / 0 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10027998 [exp] 1262 / 0 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10029646 [exp] 1236 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10042689 [exp] 258 / 5e-74 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1) Lus10004421 [exp] 141 / 1e-36 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 141 / 1e-36 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 121 / 5e-30 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201600 [exp] 1697 / 0 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.002G215600 [exp] 1436 / 0 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.014G138400 [exp] 1420 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.016G142500 [exp] 876 / 0 AT3G23590 871 / 0.0 REF4-related 1 (.1) Potri.008G202600 [exp] 149 / 1e-39 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 149 / 1e-39 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10041229 pacid=23179569 polypeptide=Lus10041229 locus=Lus10041229.g ID=Lus10041229.BGIv1.0 annot-version=v1.0 ATGCGAAAGAAGAAGACTGGCACAAACCCCCGTGCCACGACTGTCTTCGTTGGCCGAAGAATGAGGCTGGCACGCACAGTCCGGCACTCAGGGAGGCGAG AAATCCAGAAGAAAGGTTTCCCTACTGCTCCGTTTTCTGAAACGGAAGACCAAAAAAAGGTTAAGACTTGCGAGGTTTTCCATCTTGTCTACAAAGTCCG CAGACAGTCTCCTTCTCCAGGTAGTGAAATGGCTGCTCCGCTGAGCATGTGGAATAGTGTTTTAGAGATGACCAAGATGGCACAACAGAAGGTTTGCGAT CCTATGCTGTGGGCTCTGCAAATTTCTTCCAATTTGAGCTCCTATGGTATCCCATTACCCTCCCCAGAGCTCGCGGATATGTTGGTTTCTTACATTTGTT GGGATAACAATGTCCCTATCATGTGGAAGTTCCTCGACAAGGCTTTGGTGCTCAACATTGTTCCTCCTCTCTTGGTTCTTGCTCTGCTCTCTCCCAGGGT TATTCCTTGCAGACGTTCCAAGCCGGTGGTGTATAGACTCTACTTGGAACTCTTGAGAAGACATGCTTTTGAGCTCAAGAGTCAGATAAATGGCTCAAAT TATGAAACGGTCATGAAATTGGTAGATGCTGCTCTTCATCTTTCCGAGAATTTTGGTTTAGAAGCCAGTGATCCTGGGGTCCTTGTCGTTGAATTCATCT ATTCAATCGTGTGGCAGCTGCTGGATGCATCTTTGGACGATCAAGGGCTGCTTGAACTTACATCAGACAAAAAGTCGGTATGGCCAATAAAGTCTCAAGA TATGGAAGTACATGGCCATGAAAGTTCTGATGGGAGAGCAACGGAACATAATGACAAGTTGCTCAGCTCGAACACAGAGATGGCCGTTGAGATGATTGGG AGATTCCTGCAAGACAAGAAAACATCAAAGATTCTTTACCTGGCACGTTACACTTTACCCACACATTGGCCAAAGTTCATTGAGAGGCTACAGCTACTTG GACTCAGAGGTTCACAGGTTTCAACTTCGGAGGATCTTGTGCGTTTCGCTTCGGTTAATTGCACGATTCTCACTCAAGAACCAAAAAAGAACTTGATGTG GAAGTTTCATGCTGTCACTGTTTCCGTGTCCCCTCTAGTGTCATCTGGAGTTCTATGTGACGGTGGCAGTATCTCTTCTCTTTGGCTTCCTCTTGATCTC GCCCTAGAAAATGCCATGGATGGATATCAAGTCAATGCTACAAGTGCTATCGACGTTGTGAAAGAATTGGTGAAAGTCCTTCAAGCTATGAATGGCACCA CATGGCATGATACTTTTGTTGGACTTTGGATTGCTGGTCTCCGCCTTGTTCAAAGGGAACGAGATCCTATTGAAGCTCCCATCCCCCGCTTGGAATCACG ACTCTGCATGCTTCTATCCATCATTCCTCTTGTGGTTGCTGAAGTCATTGAAGAAGAGGAAACCGAACCTATTGAGCAACTAGAATGTGACTCTACAAAT CACTGGAAACATCAGAATGTTTCAGGAAAGCGAGGCAGAGATGTGGTCTCTAGCATCCAATTATTGGGTGACTACCAGCGTCTGCTCAGTCCGCCTAAAT CGGTTCAATCATTGGCAAATCAGGCTGCTTCAAAAGCTATGTTGGTTGTTGCAGGCCTCAATGTCAATGACGTGTCCCTTGATAGTGTCACAATGAAGAA CATTCCAGTTAGTTCTGGGAACTTGCGCCATCTCATTGTTGAAGCTTGTATAGCAAGAAATTTGTTGGACACATCAGCATATTTCTGGCCTGGTTATGTG AATGGTCCCATAAACCAAAAACCTAATGTCCCGACTCAACTGCCTGGCTGGTCATCCTTTTTGATGGGTGCCCGTCTTACTCCAATTATGATCAATGCAA TGGTTTCAACTCCTGCTTCAAGTTTAGCAGAGCTCAAGAAAGTATTTGAGCTGGCAGTCAAAGGTTCAAACGATGAGAAGATCTCCGCAGCTATTATTCT CTGTGGGGCTTCTCTACTCCAGGGCTGGAACATACAGGAACACATAGCTCAATTTATTACTAGATTACTCTCCCCTCCCATTCCTGCGGATTATCTTGGA GATGAAAGTCATTTAATAGGCTTGGCTCCATTCCTGAATGTACTGATTGTTGGGATATCATCAGTTGATTGCATTCAGGTTTTCTCGCTCCATGGCTTGA TACCACAGCTTGCATGTTCTTTGATGTCAATTTGCGAGGTTTTTGGATCATGCGTTCCCGATGTGTCATGGAAGCTTCCAACTGGAGATGAAATCTCTGC CTATGCTGTGTTTTCAAATGCATTTGCTGTTCTCTTGAAGTTATGGAGATTCAATCAGCCTCCTTATGAACATGGTGTCGGAGATGTCCCTACTATTGGA CATGAACTAACTCCTAACCATCTCCTACTCGTAAGAAACTCCTACCTATCCTCTTCTGGCGTTGTCCTCAAAGATCAAACCAAGAGGAGAATTTCAGATG TCACGACTTCATCATCTCCATTCCCGGTATTCTTGGACTCATTTCCAAAAATTAAATGGTGGTATAGGCAACATCAGAAATGCATAGCTTCAACCTTCTC TGGACTAGCTCATACAACTCCAGTTTACCAGACTGTAAATCTGCTTCTTACTATGATGTTCAGAAATATTAATAGAGGCAGCCAATCCGTAACTATTATC AATTCCGGAAGTAGTAGCAGTACTAGTAGTTTATCTGTACCTGCGAATGAGGATTCTTCACTAAGACCTAAATTACCTGCGTGGGAAATCTTAGAAGCTG TTCCTTTCGTGGTTGATGCTGCTTTATCAGCTTGTGGTCATGGAACACTTGACCCTCGTGATCTCGCCACAGGGCTGAAAGATTTAGTAGATTTTCTACC TGCATCTTTGGCAACCATTGTCAGTTACTTCTCAGCTGAAGTAAGTAGAGGTGTTTGGAAGCCGGTATTTATGAATGGTACAGATTGGCCAAGTCCTGCT GCAAATTTGTCTAACGTTGAGGACAAGATCAAGAAAATCTTAGCAGCAACTGGTGTCGATATACCTAGCCTTGCAGCAGGAGGGAGCTCACCAGCCATTC TTCCACTTCCTTTAGCCGCTTTCGCCAGCCTCACCATCACCTACAAAATTGACAAAGCATCAGAAAGATTTCTCAATTTGGCTGGTCCGGCTCTGGAATA TCTTGCAGCAGGTTGCCCTTGGCCTTGCATGCCAATTGTGGCTTCCTTGTGGACCCTGAAAGCAAAACGATGGTTTGACTTCCTTGTGTTCTCTGCATCG CGTACCGTCTTCCTCCACAGCAACGATGCAGTTTCCCAGCTGCTTAAGAGCTGCTTTACAGCCACGCTTAGAGGTGCAGCCATCTCAAGCAATGGAGGAG TTGGAGCACTTCTAGGTCATGGGTTTGGTTCTCATTTCTGCGGTGGAATCTCCGCTGTAGCTCCAGGAATCCTGTACTTGAGAGTGTATCAGTCCATCAG AGACATTGATTTCATCACTGAAGAGATCATTTCTCTCATGATGCATTCCGTCACACAAGTTGCACGCACCGAGCTTCCTAAAGAGAGACCAGGGAAGCTG AAGAGGACAAGAAATGGACTTGAATCTGGCCAAGTTTCACTTGCTGCAGCAATGACAAGGGTGAAACTTGCTGCTTCACTTGGAGCTTCTCTAGTATGCT TATCTGGAGGCATAGGATTGGTTCATGTGCTGTTTAAAGAAACACTGCCCTCTTGGTTTATATCCAGCCATTATTCCGAGAAGGAAGAAGATGGCTGCCT TGGTGGAATGGTAGCGATGCTGAGAGGGTACACGCTTGCATATTTTGCTGTGCTTTGTGGAGCCTTTTCTTGGGGAATCGGTACCTCATCAACTGGTTGC AGGAGGCGTCCACAAGTCCTGGGAGTTCACGTTGAGTTCCTAGCGAATGCTCTTGATGGGAAAATCTCACTCGGTTGTGACAATGCAACTTGGAAGTCGT ACATTTTAGGATTCCTCAGCCTGATTGTAGACTGTATGCCTTCATGGGTGCTTGACCTGGAAGCAGGTGTTGTGAAGAGACTAAGCAATGGGTTGACAGG GTGGAACGAGGAGGAACTTGCCTTGGCTTTGTTATGCATTGGTGGGATGGACACCATGGGTTTAGCTGCTGAAATGATAATCCAGCTTGGTGGGTTGTTT CGTAAGCGAGGAAAGGAACAAGTGTGCCAAATATTTGGGGGATTGCACCCTCGCTTACCCGTTAAGCAAACCTGTTCCTTCCTTCTGCGATCCCCTACCA TCCACATTGCAGCAGAACCAAGGATTTTCTCCTCCTCTTCCATAGCTTCCTTCACCTGGGCCTCTGCTCTGAGGATCACTGTCTTCCTCCTTGCCGCTGT TATTGTCGCCTGCTGCACTCTTCCCGTTGAGAAGATACTGAAGGACTTTTTATTAAGGGTTGAACAGGATCTTGGACCTTGGGGTCCTCTTGTGCTTGCC GTGGCATATATACCTTTGACGATCTTGGCTGTTCCAGCATCAGTGCTTACTCTTGGTGGTGGATACCTATTTGGGCTGCCTATTGGCTTTGTTGCGGTTT CTATTGGTGCCGCCATTGGTGCAGGAGCTGCCTTTCTTATTGGAAAAACTCTCGAAAGATCTATAGTTGTATCAAAGTTGAAGGATTATCCACAGTTCAG ATCATTTGCTATTGCTATTTAA
AA sequence Show only first row Show all	>Lus10041229 pacid=23179569 polypeptide=Lus10041229 locus=Lus10041229.g ID=Lus10041229.BGIv1.0 annot-version=v1.0 MRKKKTGTNPRATTVFVGRRMRLARTVRHSGRREIQKKGFPTAPFSETEDQKKVKTCEVFHLVYKVRRQSPSPGSEMAAPLSMWNSVLEMTKMAQQKVCD PMLWALQISSNLSSYGIPLPSPELADMLVSYICWDNNVPIMWKFLDKALVLNIVPPLLVLALLSPRVIPCRRSKPVVYRLYLELLRRHAFELKSQINGSN YETVMKLVDAALHLSENFGLEASDPGVLVVEFIYSIVWQLLDASLDDQGLLELTSDKKSVWPIKSQDMEVHGHESSDGRATEHNDKLLSSNTEMAVEMIG RFLQDKKTSKILYLARYTLPTHWPKFIERLQLLGLRGSQVSTSEDLVRFASVNCTILTQEPKKNLMWKFHAVTVSVSPLVSSGVLCDGGSISSLWLPLDL ALENAMDGYQVNATSAIDVVKELVKVLQAMNGTTWHDTFVGLWIAGLRLVQRERDPIEAPIPRLESRLCMLLSIIPLVVAEVIEEEETEPIEQLECDSTN HWKHQNVSGKRGRDVVSSIQLLGDYQRLLSPPKSVQSLANQAASKAMLVVAGLNVNDVSLDSVTMKNIPVSSGNLRHLIVEACIARNLLDTSAYFWPGYV NGPINQKPNVPTQLPGWSSFLMGARLTPIMINAMVSTPASSLAELKKVFELAVKGSNDEKISAAIILCGASLLQGWNIQEHIAQFITRLLSPPIPADYLG DESHLIGLAPFLNVLIVGISSVDCIQVFSLHGLIPQLACSLMSICEVFGSCVPDVSWKLPTGDEISAYAVFSNAFAVLLKLWRFNQPPYEHGVGDVPTIG HELTPNHLLLVRNSYLSSSGVVLKDQTKRRISDVTTSSSPFPVFLDSFPKIKWWYRQHQKCIASTFSGLAHTTPVYQTVNLLLTMMFRNINRGSQSVTII NSGSSSSTSSLSVPANEDSSLRPKLPAWEILEAVPFVVDAALSACGHGTLDPRDLATGLKDLVDFLPASLATIVSYFSAEVSRGVWKPVFMNGTDWPSPA ANLSNVEDKIKKILAATGVDIPSLAAGGSSPAILPLPLAAFASLTITYKIDKASERFLNLAGPALEYLAAGCPWPCMPIVASLWTLKAKRWFDFLVFSAS RTVFLHSNDAVSQLLKSCFTATLRGAAISSNGGVGALLGHGFGSHFCGGISAVAPGILYLRVYQSIRDIDFITEEIISLMMHSVTQVARTELPKERPGKL KRTRNGLESGQVSLAAAMTRVKLAASLGASLVCLSGGIGLVHVLFKETLPSWFISSHYSEKEEDGCLGGMVAMLRGYTLAYFAVLCGAFSWGIGTSSTGC RRRPQVLGVHVEFLANALDGKISLGCDNATWKSYILGFLSLIVDCMPSWVLDLEAGVVKRLSNGLTGWNEEELALALLCIGGMDTMGLAAEMIIQLGGLF RKRGKEQVCQIFGGLHPRLPVKQTCSFLLRSPTIHIAAEPRIFSSSSIASFTWASALRITVFLLAAVIVACCTLPVEKILKDFLLRVEQDLGPWGPLVLA VAYIPLTILAVPASVLTLGGGYLFGLPIGFVAVSIGAAIGAGAAFLIGKTLERSIVVSKLKDYPQFRSFAIAI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	0	1
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	1.4	0.9259
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	2.0	0.8841
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	3.5	0.8953
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	4.9	0.8982
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	5.3	0.8813
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	8.5	0.8724
AT2G39910			ARM repeat superfamily protein...		Lus10028256 [exp]	8.7	0.8480
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	8.7	0.8170
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	9.5	0.8688
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	9.7	0.8841

Compare expression of checked genes

Lus10041229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.