Plant FIBer expression Database

Lus10041231 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34357 591 / 0 ARM repeat superfamily protein (.1)
AT4G23540 133 / 5e-32 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021944
[exp]
1185 / 0 AT2G34357 1194 / 0.0 ARM repeat superfamily protein (.1)
Lus10031065
[exp]
131 / 3e-31 AT4G23540 843 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G137900
[exp]
776 / 0 AT2G34357 1301 / 0.0 ARM repeat superfamily protein (.1)
Potri.006G050000
[exp]
172 / 2e-44 AT4G23540 927 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10041231 pacid=23179909 polypeptide=Lus10041231 locus=Lus10041231.g ID=Lus10041231.BGIv1.0 annot-version=v1.0
ATGGAAGAAGCTTTGTGCACTGCCCTTCGGGAGGAACATGATGTCCGTGGAATACTGTGTTCCGCATTGCAAATCCTTATTCAACAAAACAAAAAAATCC
GGGATGGGGAAAATGATCACTCAGATGCAGATATTGGTACAGCTAAACAGATAGTTCTAGCCCACTACACTTGTGATGTTGCAAATCAAAATCTGAGCTT
GCTGCGGTCATGCTCTCGCAAGCTCTTACCTGTTCTGTCGGGAATACTTCTTGACTCTGCAAAGGATGATGGTGGTTGTTTGCAGTCTACAATATCTGAT
TTTGCTTCACTAGCTGCTGAAGATGAAAATACAAGGGAAGTAGTTTCACGCAGATTCTTGCAGACAATGAAAATGATTTTGAAGGCTACGAAGCGTGCAG
GACAAGCTGGAAGGTCCAAGAATTCTGATGCTATGTTGGTTGATGATTCTACTGATGAAAAGTCTTTATCAATTGAAAGGGCTCGGCTGTTTGATCTGGC
ATCTTCACTTCTTCCTGGATTGAAAGAAGAAGAGGTTCACCTTCTATTTCAAGCTGTGGAAACTGCATTGAAGGATCCTGTGGGTTCAGTGCAAAAAAAA
GGATACAAAGTACTTTCTCTGCTTCTCCAGAATGGGTTCCCGACATCAAGCTTGGATAAACTGCAGGAACTCATGATCGAACTGCTGCCCTGTCACTTTT
CTGCAAAGCGTCACAGACTCGATTGTTTGTATTTCCTAATAGTTGATGTTTCCAAGGCAGCGTCTGAGCAGAGACGTCATAACATCCTTACTTCATTCCT
CACTGAGATAATACTCGCTTTGAAAGAGGCTAACAGGAAAACAAGAAATAGAGCTTATGATTTGCTTGTCCAGATTGGCCATGCATATGGAGATGAAGAG
AGTGGTGGGAAAAGAGAGGATCTGTACAAGTTATTTAACTTGGTCGCTGGAGGACTTGCAGGAGAAACTCCTCAGATGGTCAGTGCTGCAGTGAAAGGGT
TGGCCCGCCTGGCTTATGAATTTTCGGACCTTATCTCTTCAGTTTACACACTACTTCCATCTACATTTCTACTCCTTCAAAGAAAGAACCGTGAAATTAT
TAAGGCTAATTTGGGGCTGATGAAGGTACTAGTGGCCAAATCACAGGCCGATGGCCTGCAAATGCATTTGGGAAGCATTGTAGAAGGCTTGATAAAGTGG
CGAGATGACAGCAAGAGCCATTTCAAAGCAAAGGTTAAAAATCTCCTAGAAATGCTGGTGAAGAAATGTGGCTTGGAGGCTGTCAAGAGAGTAATGCCCG
AGGAACATATGAAGCTTCTTACCAATATCCGGAAGATAAATGATCGAAGAGAGAGGAAGCTTTCGTCCAACTCAGAGGAAAATAAATCCCGAATGTCTAG
AGCCACTACATCGAGGTTAAGCAGATGGAACCATACGAGAATATTTTCTGATTCAGGTGATGAAGAAATGGATGACAGTGATGATGATATGAAGACTGCT
TTTGGTCGACTTAGCCATCAGCTGAAGTCCAAGGCATCCTTATTACGGTCAAAGAGAAAACGTATGTCAGGCAATAGTTTGACGGAGGACTCGTTCAGTC
AGTTAGACGACGAGCCGCTCGATTTGCTCGATCGGAACAAAACAAGAGCGTCTCTTCGATCGGAGAAAAGGAAACACGAAGAATTAGATGACGAACCAGA
GATAGATGAGGAAGGACGTATGGTAATTCACGAAGGGGAGAAGCCAAAGAAAACAGCTTTTGATACGTCGGACGCAAAGAGTGACGCAGGAAGCAACGTT
TCGTCGAGGACAAAAACGAGGACAAAATTGCAGAAGAAGCGCAGGAAGACATCGGAGAGTGGATGGTCATATACTGGGAAAGAGTATGGAAGCAAGAAGG
CTGCTGGCGATGTGAAGCGGAAAGGAAAACTCGAACCTTATGCCTACTGGCCACTCGATCGTAAGATGATGAGCAAAAGACCAGAACAAAGAGCCGCTGC
GAGGAGAGGGATGTCTAGTGTGGTGAGAATGACCAAGAATCTCCAAGGCAAGTCTGCATCAGCTGCACTTTCTTCTATGAAGCTTGGAAAGAAGAAGAGC
TTTAAAAAGAAAAGCAGCAGCTAA
AA sequence
>Lus10041231 pacid=23179909 polypeptide=Lus10041231 locus=Lus10041231.g ID=Lus10041231.BGIv1.0 annot-version=v1.0
MEEALCTALREEHDVRGILCSALQILIQQNKKIRDGENDHSDADIGTAKQIVLAHYTCDVANQNLSLLRSCSRKLLPVLSGILLDSAKDDGGCLQSTISD
FASLAAEDENTREVVSRRFLQTMKMILKATKRAGQAGRSKNSDAMLVDDSTDEKSLSIERARLFDLASSLLPGLKEEEVHLLFQAVETALKDPVGSVQKK
GYKVLSLLLQNGFPTSSLDKLQELMIELLPCHFSAKRHRLDCLYFLIVDVSKAASEQRRHNILTSFLTEIILALKEANRKTRNRAYDLLVQIGHAYGDEE
SGGKREDLYKLFNLVAGGLAGETPQMVSAAVKGLARLAYEFSDLISSVYTLLPSTFLLLQRKNREIIKANLGLMKVLVAKSQADGLQMHLGSIVEGLIKW
RDDSKSHFKAKVKNLLEMLVKKCGLEAVKRVMPEEHMKLLTNIRKINDRRERKLSSNSEENKSRMSRATTSRLSRWNHTRIFSDSGDEEMDDSDDDMKTA
FGRLSHQLKSKASLLRSKRKRMSGNSLTEDSFSQLDDEPLDLLDRNKTRASLRSEKRKHEELDDEPEIDEEGRMVIHEGEKPKKTAFDTSDAKSDAGSNV
SSRTKTRTKLQKKRRKTSESGWSYTGKEYGSKKAAGDVKRKGKLEPYAYWPLDRKMMSKRPEQRAAARRGMSSVVRMTKNLQGKSASAALSSMKLGKKKS
FKKKSSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G34357 ARM repeat superfamily protein... Lus10041231
[exp]
0 1
AT5G06400 Pentatricopeptide repeat (PPR)... Lus10021250
[exp]
1.4 0.9146
AT2G34357 ARM repeat superfamily protein... Lus10021944
[exp]
2.6 0.9413
AT5G17270 Protein prenylyltransferase su... Lus10035305
[exp]
4.2 0.9055
AT4G32520 AtSHMT3, SHM3 serine hydroxymethyltransferas... Lus10005916
[exp]
4.2 0.9111
AT4G35910 Adenine nucleotide alpha hydro... Lus10018066
[exp]
7.1 0.8972
AT4G32910 unknown protein Lus10038723
[exp]
8.8 0.9036
AT4G07410 PCN POPCORN, Transducin family pro... Lus10005385
[exp]
10.2 0.9109
AT2G28600 P-loop containing nucleoside t... Lus10034162
[exp]
13.3 0.8961
AT2G21440 RNA-binding (RRM/RBD/RNP motif... Lus10022044
[exp]
13.8 0.9067
AT5G52820 WD-40 repeat family protein / ... Lus10029493
[exp]
14.5 0.8746

Lus10041231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.