Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34357 292 / 2e-91 ARM repeat superfamily protein (.1) AT4G23540 95 / 3e-22 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021944 [exp] 441 / 7e-147 AT2G34357 1194 / 0.0 ARM repeat superfamily protein (.1) Lus10031065 [exp] 103 / 5e-25 AT4G23540 843 / 0.0 ARM repeat superfamily protein (.1) Lus10035446 [exp] 98 / 3e-23 AT4G23540 835 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137900 [exp] 328 / 2e-104 AT2G34357 1301 / 0.0 ARM repeat superfamily protein (.1) Potri.006G050000 [exp] 104 / 1e-25 AT4G23540 927 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08161 [flax] [poplar] NUC173 NUC173 domain
Representative CDS sequence Show only first row Show all	>Lus10041232 pacid=23179729 polypeptide=Lus10041232 locus=Lus10041232.g ID=Lus10041232.BGIv1.0 annot-version=v1.0 ATGTTTTCGGCTCTGCAAGCTACTATGGAAAAGGAGCACGAGGAGGCTATCTTTGCAGCCACAGAGTCACTCAGAAGCTTAATAAAGACCTGCGTTGACG AAGACTTGATTAAGCAAGGGGTTGATCAAATCAAGATGAACACTAACAAGTCTGAGCCAACAGTCATTGAAAGATTGTCTGTAATCATTGAAAGCTTGCT TACCTATCAGTACGGTGCTGTTTGGGACATGGTGTTTCAGGTTGTTTCAGCAATGTTTGATAAGTTAGGATATTATTCAAGGAGATATCCCTCTTACTTT ATGAATGGAACTTTGAAGAACTTGGCCGAGATGCAGAAGTTATCAGATGATGATTTTCCTTACAGGAAGCAGTTGCATGAATGCCTTGGTTCTGCCCTTG TTGCAATGGGTCCTGAGGCTTTTTTGACTGTTCTGCCTCTAAGACTCGAGGCTGATGACCTATCTGAGGTCAATGTGTGGCTCTTTCCCATTGTCAAGCA ATATACTGTTGGTGCCCAGTTGAGCTTCTTTACAAATATGATTTTCAGTGCTATTACTATGATGAGACAGAGATCCTCTCAGCTTGAGAGAGAAGGACGG ATCGTCTCAGCTAGAAGTGTTGATGGACTTGCATACTCCTTATGGTCTTTGTTACCTTCCTTTTGCAACTACCTTCCTTTTGCAACTTCCCTTTAG
AA sequence Show only first row Show all	>Lus10041232 pacid=23179729 polypeptide=Lus10041232 locus=Lus10041232.g ID=Lus10041232.BGIv1.0 annot-version=v1.0 MFSALQATMEKEHEEAIFAATESLRSLIKTCVDEDLIKQGVDQIKMNTNKSEPTVIERLSVIIESLLTYQYGAVWDMVFQVVSAMFDKLGYYSRRYPSYF MNGTLKNLAEMQKLSDDDFPYRKQLHECLGSALVAMGPEAFLTVLPLRLEADDLSEVNVWLFPIVKQYTVGAQLSFFTNMIFSAITMMRQRSSQLEREGR IVSARSVDGLAYSLWSLLPSFCNYLPFATSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	0	1
AT2G34357			ARM repeat superfamily protein...		Lus10041233 [exp]	1.0	0.9779
AT2G34357			ARM repeat superfamily protein...		Lus10021944 [exp]	2.0	0.9584
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	2.0	0.9731
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	4.6	0.9609
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	6.0	0.9426
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036839 [exp]	8.0	0.9072
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	8.4	0.9475
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	9.7	0.9540
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	10.4	0.9491
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	10.5	0.9450

Compare expression of checked genes

Lus10041232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.