Plant FIBer expression Database

Lus10041233 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34357 69 / 1e-13 ARM repeat superfamily protein (.1)
AT4G23540 48 / 2e-06 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021944
[exp]
330 / 5e-106 AT2G34357 1194 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G137900
[exp]
173 / 6e-50 AT2G34357 1301 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10041233 pacid=23179849 polypeptide=Lus10041233 locus=Lus10041233.g ID=Lus10041233.BGIv1.0 annot-version=v1.0
ATGTGTGCAGTCATCGGAACTATTGCTCAGGAACTAAAAGACCGGAATCTGCCATCTATACCCACCGCCTACTTTGGCGCAATCTCATCCTCTCTCAGCC
GCCTGTCTTCAGAGTCCAGTCCTTCGCCTCATATTGTTGATGCTTTCGTTACTCTCCTCTCCCTGGTTCTCCCCCTCATCCCTAAAGCCACTTTGCAGAA
GAGGAGGGAGTTTTTGTCCGATCTCCTGCTGAAAGTTCTGAGGCTGAATTCAGCAAGCGACGGCGCCCTGACTTCCGGCTTGAAATGTGTTTCGCATCTC
TTGGTTAGGGACAGCGTCAACAATTGGGCGAATGAGGTAGAGCTCCTGTACGGCGCGCTATTAGGGTTCATCGCGGATTCACGGCAGAAAGTGAGAAGGC
AAACTCACGCCTCCATCCGTGACGTCTTGCAACGATTTCAGGGGAAATCAGCGCTGCTCTATCCCGCGAGCGATGGAATCACCAAGACACTGGAGAGGTT
CCTACTACTGATCGGAGGTTCTAACGCAGAAACAGAGGACTCCAAACTAGGAGCGCAACAGAGCCGGTCGTTACACGCCGCATAA
AA sequence
>Lus10041233 pacid=23179849 polypeptide=Lus10041233 locus=Lus10041233.g ID=Lus10041233.BGIv1.0 annot-version=v1.0
MCAVIGTIAQELKDRNLPSIPTAYFGAISSSLSRLSSESSPSPHIVDAFVTLLSLVLPLIPKATLQKRREFLSDLLLKVLRLNSASDGALTSGLKCVSHL
LVRDSVNNWANEVELLYGALLGFIADSRQKVRRQTHASIRDVLQRFQGKSALLYPASDGITKTLERFLLLIGGSNAETEDSKLGAQQSRSLHAA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G34357 ARM repeat superfamily protein... Lus10041233
[exp]
0 1
AT2G34357 ARM repeat superfamily protein... Lus10041232
[exp]
1.0 0.9779
AT4G27010 EMB2788 EMBRYO DEFECTIVE 2788, unknown... Lus10041554
[exp]
4.0 0.9653
AT5G58450 Tetratricopeptide repeat (TPR)... Lus10026402
[exp]
4.7 0.9428
AT3G52140 tetratricopeptide repeat (TPR)... Lus10037481
[exp]
4.8 0.9248
AT1G64790 ILA ILITYHIA (.1.2) Lus10004767
[exp]
5.2 0.9635
AT5G40480 EMB3012 embryo defective 3012 (.1) Lus10022271
[exp]
6.3 0.9559
AT1G64790 ILA ILITYHIA (.1.2) Lus10003101
[exp]
6.5 0.9493
AT3G06530 ARM repeat superfamily protein... Lus10008676
[exp]
7.4 0.9554
AT2G34357 ARM repeat superfamily protein... Lus10021944
[exp]
7.7 0.9441
AT1G10270 GRP23 glutamine-rich protein 23 (.1) Lus10024470
[exp]
8.5 0.9237

Lus10041233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.