Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19010 882 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT3G18040 676 / 0 ATMPK9 MAP kinase 9 (.1.2) AT2G42880 671 / 0 ATMPK20 MAP kinase 20 (.1) AT1G73670 657 / 0 ATMPK15 MAP kinase 15 (.1) AT3G14720 648 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G18150 637 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT1G53510 624 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT2G01450 604 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 325 / 1e-106 ATMPK4 MAP kinase 4 (.1) AT2G43790 318 / 5e-104 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021945 [exp] 1095 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10038956 [exp] 663 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10013702 [exp] 641 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10005568 [exp] 633 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10021784 [exp] 631 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10027248 [exp] 623 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10034601 [exp] 530 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10008339 [exp] 332 / 5e-109 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 332 / 6e-109 AT2G43790 692 / 0.0 MAP kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029700 [exp] 972 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 966 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.002G059900 [exp] 695 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 687 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.012G048600 [exp] 680 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 678 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.011G102500 [exp] 673 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.001G381300 [exp] 651 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.008G130000 [exp] 642 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1) Potri.010G112200 [exp] 640 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041234 pacid=23179886 polypeptide=Lus10041234 locus=Lus10041234.g ID=Lus10041234.BGIv1.0 annot-version=v1.0 ATGCAGACTGATCAGCGAAAGAAGTCTGTGGAGGTTGACTTTTTCACGGAGTATGGTGAGGGGAGCCGGTACAAGATAGAGGAAGTTATTGGAAAAGGAA GCTATGGTGTTGTTTGCTCTGCATATGACACACACACGGGAGAGAAGGTTGCTATTAAGAAAATCAATGATATATTTGAACATGTCTCTGATGCCACTCG CATCCTTCGAGAAATTAAACTTCTAAGGCTTCTCCGCCATCCAGATATCGTGGAGATCAAGCATATTCTGTTGCCTCCATCTAGAAGGGAATTTAAGGAC ATCTATGTAGTTTTTGAGCTGATGGAGTCTGATCTACACCAAGTTATCAAAGCAAATGATGATCTTACGCCTGAACACTACCAGTTCTTTCTTTATCAGT TGCTCCGGGGTCTGAAATACATTCATACGGGTGAGGAGCTTGATTACCTTGATATCTCAACAAATGTGTTTCACAGGGATCTAAAGCCCAAAAATATCTT AGCTAATGCTGATTGCAAACTGAAGATTTGTGACTTCGGTCTTGAAAGGGTAGCCTTTAATGACACTCCCACAGCTATTTTCTGGACGGATTATGTTGCA ACGAGATGGTATAGGGCTCCGGAATTGTGTGGGTCATTTTTCTCTAAGTACACACCAGCAATAGACATTTGGAGCATTGGATGCATCTTTTCTGAACTTT TGACTGGGAGACCTCTATTCCCGGGGAAAAATGTAGTCCATCAGTTAGATTTGATGACTGATCTGTTGGGAACACCATCTGCTGAAGCAATTGCAAGGGT TCGCAATGAGAAAGCTCGGAGATACCTTAGTAACATGCGGAAGAAGAAGCCAATTCCCTTTACTCATAAGTTCCCTCACGCAGATCCCTTAGCACTGCGG TTGTTAGAGAAAATGCTATCATTTGAACCCAAAGATCGGCCCACTGCTGAAGAGGCCCTAGCAGATCCATATTTTAGAGGTTTGGCCAAAGTTGAAAGAG AGCCTGCTGCTCAACCTGTTACTAAAATGGAGTTTGAATTTGAGAGGCGAAGGATAACCAAAGAGGATGTTAGAGAACTCATTTATCGAGAAACACTGGA GTACCATCCAAAAATGCTGAAAGAATTCTTGGAAGGCTCAGAACCGACAGGCTTCATGTATCCAAGTGCTGTTGACCATTTCAAGAAGCAATTTGCTCAT CTCGAGGAGCATTATGGGACTGGTACTCCACCACAGAGACAGCATGCATCATCGTTGCCAAGAGTCCAGAGCTCGGCACAGGTAACAAATGATCTTGCTA AATGTTCTATCAAAGATATAGAGAAGCCACATATGGACAAGACCGCCGTTGTCCCAATGACAAGGCTTCCCATTCAAGTGCCTCAAAGTATTCAAGCTGG TCCTGCTCGACCGGGAAAAGTTGTTGGTTCTGTACTGCGATACAACAACTGTGCCACAGCATCAGATACCGTGGACCAGCGAAGAATGATCAGAAATCCT TCTGCCACTTCTCAATATACCTCTGCAAATGGTTCATATCCAAGAACAAACGCATCCTGCAAAAATGAGAGGGGAGAAGATGAAGGAATCGAGAGGCCTG TTGGATTGCAGCCGAAACCCCAATTCATGGCTAGGAAAGTTTCTGCTGCTCAAGGAGGACCAGGAAGTCAATGGTATGGATGA
AA sequence Show only first row Show all	>Lus10041234 pacid=23179886 polypeptide=Lus10041234 locus=Lus10041234.g ID=Lus10041234.BGIv1.0 annot-version=v1.0 MQTDQRKKSVEVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKD IYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTGEELDYLDISTNVFHRDLKPKNILANADCKLKICDFGLERVAFNDTPTAIFWTDYVA TRWYRAPELCGSFFSKYTPAIDIWSIGCIFSELLTGRPLFPGKNVVHQLDLMTDLLGTPSAEAIARVRNEKARRYLSNMRKKKPIPFTHKFPHADPLALR LLEKMLSFEPKDRPTAEEALADPYFRGLAKVEREPAAQPVTKMEFEFERRRITKEDVRELIYRETLEYHPKMLKEFLEGSEPTGFMYPSAVDHFKKQFAH LEEHYGTGTPPQRQHASSLPRVQSSAQVTNDLAKCSIKDIEKPHMDKTAVVPMTRLPIQVPQSIQAGPARPGKVVGSVLRYNNCATASDTVDQRRMIRNP SATSQYTSANGSYPRTNASCKNERGEDEGIERPVGLQPKPQFMARKVSAAQGGPGSQWYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	0	1
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	4.2	0.8256
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	5.0	0.7818
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	6.0	0.7869
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10021945 [exp]	8.9	0.7694
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	10.8	0.7559
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	11.5	0.7120
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	12.0	0.8036
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	12.2	0.7542
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	15.1	0.7910
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	16.3	0.7746

Compare expression of checked genes

Lus10041234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.