Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06190 288 / 8e-97 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 282 / 2e-94 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT2G39760 182 / 3e-55 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G03740 150 / 2e-42 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT3G43700 137 / 3e-38 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G21010 128 / 8e-35 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT5G13060 58 / 1e-09 ABAP1 ARMADILLO BTB protein 1 (.1) AT5G19330 53 / 8e-08 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT2G04740 52 / 1e-07 ankyrin repeat family protein (.1) AT1G55760 46 / 7e-06 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021946 [exp] 415 / 2e-146 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10040267 [exp] 170 / 2e-50 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10004701 [exp] 169 / 3e-50 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10008421 [exp] 151 / 1e-42 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10003365 [exp] 150 / 2e-42 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10034070 [exp] 54 / 6e-08 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 53 / 9e-08 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 53 / 1e-07 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 51 / 3e-07 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200700 [exp] 350 / 9e-121 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.010G029500 [exp] 340 / 6e-117 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G059600 [exp] 198 / 1e-61 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G199200 [exp] 188 / 1e-57 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.001G184200 [exp] 164 / 5e-50 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 162 / 6e-48 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 152 / 1e-43 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 150 / 3e-43 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.005G210000 [exp] 59 / 6e-10 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 57 / 2e-09 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10041235 pacid=23179986 polypeptide=Lus10041235 locus=Lus10041235.g ID=Lus10041235.BGIv1.0 annot-version=v1.0 ATGTCTTTGTTGGAGGAGACAGTAGGACCTAGGACCTACACAATTGCCGTGCCACCTTCTGACATTGGTCTTCACTTTGGAACGCTCCTGGAAAGTGGAA AGGGGTCTGATGTGAATTTTGAAGTTGATGGAGAGATGTTTTCTGCACACAAGTTGGTTCTTGCTGCACGCTCCCCAGTCTTCAGGGCACAACTTTTTGG TCCAATGAAGGACCAAAATACTTCCTCCTTGAAAGTTGAAGATGTGGAAGCCCCAGTTTTTAAGGCTCTACTACACTTCATCTACTGGGATGCCCTGCCA GACATGGAGGAACTTGGTGTGAACTCCAAATGGGCAGCTACATTGATGGCACAACATCTACTTGCAGCAGCAGACCGTTATGCACTCGAGAGGCTCAGAT TGTTGTGTGAAACAACACTTTGTGAGGATGTTGCTGTAGATACGGTTGCAACTACTCTAGCCTTGGCAGAGCAGCATCAATGTCTCCAATTAAAAGCTGT GTGCCTCAAATTCATTGCATTGCCCGAAAATCTGAAAGCTGTTATGAAAACGGATGGATTCGAGTACCTGAAGCAAAGCTGCCCTAGTGTTATCACAGAG CTGTTGCAATATGTAGCCAATGTTGGTGAGCATTCTGCAGTTGCTGCTTGCACTCATGGGATCCAATGCTTAGACGGCGATATAAACGGGAGACGGGTGA AGCAAAGGATCCATTGA
AA sequence Show only first row Show all	>Lus10041235 pacid=23179986 polypeptide=Lus10041235 locus=Lus10041235.g ID=Lus10041235.BGIv1.0 annot-version=v1.0 MSLLEETVGPRTYTIAVPPSDIGLHFGTLLESGKGSDVNFEVDGEMFSAHKLVLAARSPVFRAQLFGPMKDQNTSSLKVEDVEAPVFKALLHFIYWDALP DMEELGVNSKWAATLMAQHLLAAADRYALERLRLLCETTLCEDVAVDTVATTLALAEQHQCLQLKAVCLKFIALPENLKAVMKTDGFEYLKQSCPSVITE LLQYVANVGEHSAVAACTHGIQCLDGDINGRRVKQRIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10041235 [exp]	0	1
AT4G10970			unknown protein		Lus10023075 [exp]	3.2	0.9472
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	4.2	0.9535
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	4.5	0.9375
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	4.6	0.9453
AT5G55850		NOI	RPM1-interacting protein 4 (RI...		Lus10006250 [exp]	8.3	0.9271
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	10.6	0.9426
AT2G30105			unknown protein		Lus10031861 [exp]	11.7	0.9288
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	13.7	0.9349
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	15.6	0.9277
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	15.7	0.9358

Compare expression of checked genes

Lus10041235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.