Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06200 341 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G41880 88 / 1e-19 AGK1, GK-1 guanylate kinase 1 (.1) AT3G57550 86 / 5e-19 GK-2, AGK2 GUANYLATE KINAS 2, guanylate kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021947 [exp] 566 / 0 AT3G06200 342 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011328 [exp] 89 / 5e-20 AT3G57550 518 / 0.0 GUANYLATE KINAS 2, guanylate kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029400 [exp] 370 / 8e-130 AT3G06200 331 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G200600 [exp] 368 / 7e-129 AT3G06200 337 / 8e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G053400 [exp] 90 / 2e-20 AT3G57550 519 / 0.0 GUANYLATE KINAS 2, guanylate kinase (.1.2) Potri.016G054200 [exp] 90 / 3e-20 AT3G57550 493 / 1e-174 GUANYLATE KINAS 2, guanylate kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00625 [flax] [poplar] Guanylate_kin Guanylate kinase
Representative CDS sequence Show only first row Show all	>Lus10041236 pacid=23180036 polypeptide=Lus10041236 locus=Lus10041236.g ID=Lus10041236.BGIv1.0 annot-version=v1.0 ATGTTTCGCGGATTATCCTTCTCTTTCTCCCGCACAGCCATTCTTTCTTCACCGATTTTCCACCGCCACCACCAATCTCTGTCAATTCCGTCAGAATTCA ATCCCTTTCCTTTCCTCCCACGACAAGTTCGTCGCTTAGCTTCTTCCAGTTCCAAGATGAACGACACCTCGAAACCGAAACAAACCATCCCCGTCCTCGA AAAGGCCACCAAACCAGACCTATTCCGTTCCCTGGAGTCGCATTTAGGTTCTTCCTTCAGCACCGAGCCTTACTGCCCAAAGCCGAATCCTCTAATCGTG GTGATCAGCGGGCCAAGCGGAGTCGGGAAAGATGCCGTGATAAGGAAACTGAGGGAAACCAGGGAGAATCTGCATTTCGTGGTGACTGCAACGAGCAGGG CGATGAGGCCCGGAGAGGTCGAAGGTAAAGACTATTACTTTGTATCGAAGGAAGAGTTTATCGACATGAAGAACAAGGACGAGCTGCTGGAGTATGCGCT TGTGTACGGCGATTACAAAGGGATTCCGAAACGTGATATCAGGGAGTTCATGGGGAGAGGATACGACATCGTGTTGAGGGTTGATATCCAGGGAGCTCGC ACGCTGAGGGATAAATTCAGGGACAGCGCTGTGTTTGTATTCTTGGTCGCTGAAAGCGAGTCAAAATTGGTGGAGAGGTTGACTGGGAGGAAGACGGAGA GTAAAGAGGAATTGCTTGTGAGGATTCGTACTGCTAGAGAGGAAGTGAGGCATGTGAAGAGCTTTGATTATGTGGTTGTTAATGCCGAGGGGAAGCTTGA TGATGCCGTTAACTTGGTTGGTTCCATCATCGATGCTGAGAAGGCTAAAGTTCGCCAGAGGTTTGCTGCAGTTTAG
AA sequence Show only first row Show all	>Lus10041236 pacid=23180036 polypeptide=Lus10041236 locus=Lus10041236.g ID=Lus10041236.BGIv1.0 annot-version=v1.0 MFRGLSFSFSRTAILSSPIFHRHHQSLSIPSEFNPFPFLPRQVRRLASSSSKMNDTSKPKQTIPVLEKATKPDLFRSLESHLGSSFSTEPYCPKPNPLIV VISGPSGVGKDAVIRKLRETRENLHFVVTATSRAMRPGEVEGKDYYFVSKEEFIDMKNKDELLEYALVYGDYKGIPKRDIREFMGRGYDIVLRVDIQGAR TLRDKFRDSAVFVFLVAESESKLVERLTGRKTESKEELLVRIRTAREEVRHVKSFDYVVVNAEGKLDDAVNLVGSIIDAEKAKVRQRFAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06200			P-loop containing nucleoside t...		Lus10041236 [exp]	0	1
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10026842 [exp]	5.1	0.8340
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	6.9	0.8043
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10006020 [exp]	7.5	0.8380
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	10.4	0.7908
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	12.0	0.7929
AT3G13130			unknown protein		Lus10038793 [exp]	13.4	0.8321
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10013607 [exp]	14.7	0.7886
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	18.4	0.7906
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	20.4	0.8233
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	22.6	0.8205

Compare expression of checked genes

Lus10041236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.