Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14290 662 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 660 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G17150 421 / 2e-144 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021948 [exp] 993 / 0 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10001114 [exp] 809 / 0 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 776 / 0 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039125 [exp] 365 / 2e-120 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10038733 [exp] 300 / 4e-96 AT4G17150 469 / 1e-162 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029200 [exp] 766 / 0 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G200400 [exp] 709 / 0 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G001000 [exp] 434 / 1e-147 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G000700 [exp] 433 / 2e-147 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10041237 pacid=23179797 polypeptide=Lus10041237 locus=Lus10041237.g ID=Lus10041237.BGIv1.0 annot-version=v1.0 ATGGAACAGCTCGTCAACTTTATCATACGACCCCCCAGAGCTGAATACAACCCGAAACATGATTTGTTGGAGCCGGAGTTCATGCTTGGAGGGAAATTAT ACCAGAGAAAGGATGTGGAGATTAAGAACAGTAGAGGAGATGTTCTTCAATGCAGTCATTATGTCCCAATCGTAAGTCCGGAAGGAAAGCCTTTGCCTTG TGTAATTTATTGTCATGGAAACAGTGGGTGCAGAGCTGATGCCAGTGAAGCTGCTATCATCCTGCTGCCTTCAAATATCACAGTTTTCACTCTTGATTTC TCTGGATCTGGACTATCTGGAGGAGATCACGTTAGTCTGGGATGGTATGAAAAAGACGATCTCAGATCAGTGGTTAGTTATTTGAGACAAGATGGAAATG TCTCTCTGATCGGGTTGTGGGGCCGATCCATGGGTGCTGTCACCAGCTTAATGTACGGAGCACATGATCCATCAATTGCTGGAATGGTGCTGGACAGTCC CTTCTCTGATTTGGTTGATTTGATGATGGAACTTGTAAATACCTACAAATTCCGTTTGCCAAGATTTACAATAAAATTTGCAATTCAATACATGCGGAAA GCTATCCAAAAAAAGGCAAAGTTCGACATAACAGATCTGAACACTATTAAGGTAGCCAAATCTTGCTTTGTTCCGGCTTTATTTGGGCATGCGAATGAAG ATGATTTCATAAAGCCTCATCATTCTGATCGGATATACGAAGGCTACATGGGAGACAAGAATATCATTAAATTTGAAGGAGACCACAATTCGCCACGCCC ACAGTTCTATTTTGATTCCATAAACATATTTTTCCACAATGTGTTGCAACCTCCACCGGATGAGATCAGGGGACCTTATCTGGAAACAATGATTGATTAC TTTGGTAAGGATAGTTGGAACTCTGTGAATGACCTGGGTCATCAGCCAGAATCTTCAGTTGTAACCAACGTGGCAGGGTCATCAACGAATAGCACCAGAG ATGCTATTAAGCAAGTCCGTGCCAGAAGACCTATGAGTCGGATTGAGGTTCCATCGGATATTTCAACAGAAGTCAAATCTGAGAATCAGGAAACTGATGA TGATAACGTTCCATCGTCATCTCAAATGATAAGCTTTGAGTTGTCCAACGACAATCCATACGGCTCTCATGTCCCGACAACACCTGATGATGATCAATAC GTGGAATACCAGCTGGAGGACTTGACAGGTGTTCCATCCAGCTCGGATGAGGAAGAAAGGATGCTCATGGAAGCAATTATCGCTTCGCTGAAGGACATGG AGGTGCCACAGCCCAATGCGGAAGAAGTTCAAGCAGCAAACTCCACGGATACAGATTCTTCAAAAACGATTGAAGCAGCGATGCCACAGGTGGCATCACA TTCTGATCCCGCAACAAAGACGGAATCAAATTCAGCTTTAAGAACGGAACATTCATCTGGTGATTCTGGTATTCCTTCTGGACCTATCTTCGCCAATTCT ATCTCGGTAGAGGGATCCGGTCACAGCGACACATCAACAGGCCTAGAAACGGACTTATCAGGTAAGACAAAGGCAACAATAACGGTAGAACGGAATCCTT CAAACAAGATTGGTCTAATGCGTCGTTGGGATTTCAACCTGTTCAGAAACAACAGATGA
AA sequence Show only first row Show all	>Lus10041237 pacid=23179797 polypeptide=Lus10041237 locus=Lus10041237.g ID=Lus10041237.BGIv1.0 annot-version=v1.0 MEQLVNFIIRPPRAEYNPKHDLLEPEFMLGGKLYQRKDVEIKNSRGDVLQCSHYVPIVSPEGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTLDF SGSGLSGGDHVSLGWYEKDDLRSVVSYLRQDGNVSLIGLWGRSMGAVTSLMYGAHDPSIAGMVLDSPFSDLVDLMMELVNTYKFRLPRFTIKFAIQYMRK AIQKKAKFDITDLNTIKVAKSCFVPALFGHANEDDFIKPHHSDRIYEGYMGDKNIIKFEGDHNSPRPQFYFDSINIFFHNVLQPPPDEIRGPYLETMIDY FGKDSWNSVNDLGHQPESSVVTNVAGSSTNSTRDAIKQVRARRPMSRIEVPSDISTEVKSENQETDDDNVPSSSQMISFELSNDNPYGSHVPTTPDDDQY VEYQLEDLTGVPSSSDEEERMLMEAIIASLKDMEVPQPNAEEVQAANSTDTDSSKTIEAAMPQVASHSDPATKTESNSALRTEHSSGDSGIPSGPIFANS ISVEGSGHSDTSTGLETDLSGKTKATITVERNPSNKIGLMRRWDFNLFRNNR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	0	1
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	1.0	0.9705
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	2.4	0.9417
AT5G62570			Calmodulin binding protein-lik...		Lus10034121 [exp]	3.7	0.9208
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10028744 [exp]	5.3	0.9113
					Lus10034398 [exp]	6.0	0.9394
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	6.6	0.9319
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	7.7	0.9138
AT5G18940			Mo25 family protein (.1.2)		Lus10012762 [exp]	8.6	0.8987
AT1G55200			Protein kinase protein with ad...		Lus10036100 [exp]	10.1	0.9099
AT1G76480			unknown protein		Lus10006035 [exp]	10.5	0.9149

Compare expression of checked genes

Lus10041237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.