Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67590 69 / 7e-14 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015817 [exp] 209 / 2e-66 AT1G67590 280 / 5e-92 Remorin family protein (.1.2) Lus10026481 [exp] 160 / 2e-50 AT1G67590 63 / 2e-12 Remorin family protein (.1.2) Lus10036997 [exp] 136 / 3e-41 AT1G67590 51 / 1e-08 Remorin family protein (.1.2) Lus10032549 [exp] 99 / 4e-24 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10038521 [exp] 45 / 2e-05 AT1G30320 128 / 4e-34 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178300 [exp] 97 / 1e-23 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 95 / 6e-23 AT1G67590 253 / 8e-82 Remorin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041239 pacid=23179933 polypeptide=Lus10041239 locus=Lus10041239.g ID=Lus10041239.BGIv1.0 annot-version=v1.0 ATGTCTCAAAATCATATTAATAATTTTTTTGGTCTGAGTCGTAATTTTCACAATGGAGCAACGACGCCGGTTCATAATCAGCAAGAGATTCCTAACAGCG ATGGAGCAATCAGCTTCGAGTTTCATAAAGGTAGCAGAACCGACAAGACTTCTTCTTCAGCTAGGAATAATCACCGTCAGCAGCACCACAGGATTGCGTT GGGGAAGCCGACGCCGTCGAAATGGGACGGCGCGCAAAAATGGCTGGTGGGGTTATCGAGAGGCGGCGACAGTGGAGGGGGAGGGGATAAGAATCATATC CAGCATCCTCAGAATTCGAACGCTGACGATCAGCGGTTGATTGCTCCGGTGCTGCAGGTGGAGCTGGAGTGCGACGACGAGTCGATTTGGCGGATTAATA AGCATGCTGCCGGTGGTTTGATTAATAAGCATGCTGTCGTCTCTGCTGCTCCGCTGGCGATTCGCGTTAGAGATATGGGGACGGAGGATGATGATGATGA GGAAGAGGATGGGTATTCCAACGGCAGAGGAGATGGAAGGGGAGGAGATCGAACGAAGACAGTCGAGAGGGAGATGGTTTTTATAATGATTAGGATTAAT GATGATGTGGCGTGTTTGTGTGGTTGA
AA sequence Show only first row Show all	>Lus10041239 pacid=23179933 polypeptide=Lus10041239 locus=Lus10041239.g ID=Lus10041239.BGIv1.0 annot-version=v1.0 MSQNHINNFFGLSRNFHNGATTPVHNQQEIPNSDGAISFEFHKGSRTDKTSSSARNNHRQQHHRIALGKPTPSKWDGAQKWLVGLSRGGDSGGGGDKNHI QHPQNSNADDQRLIAPVLQVELECDDESIWRINKHAAGGLINKHAVVSAAPLAIRVRDMGTEDDDDEEEDGYSNGRGDGRGGDRTKTVEREMVFIMIRIN DDVACLCG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67590			Remorin family protein (.1.2)		Lus10041239 [exp]	0	1
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	2.0	0.7965
AT5G36930			Disease resistance protein (TI...		Lus10034697 [exp]	5.5	0.7787
AT1G53645			hydroxyproline-rich glycoprote...		Lus10005585 [exp]	11.6	0.7741
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	24.0	0.7331
AT5G15640			Mitochondrial substrate carrie...		Lus10041498 [exp]	35.9	0.7446
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10040767 [exp]	37.6	0.7418
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	41.3	0.7481
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	42.0	0.7088
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10004770 [exp]	43.0	0.7398
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	48.2	0.7414

Compare expression of checked genes

Lus10041239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.