Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18930 325 / 4e-110 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) AT3G25570 236 / 1e-75 Adenosylmethionine decarboxylase family protein (.1.2) AT3G02470 221 / 2e-69 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G15950 214 / 1e-66 Adenosylmethionine decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021951 [exp] 605 / 0 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10040973 [exp] 248 / 2e-79 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10035083 [exp] 233 / 6e-74 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10000156 [exp] 231 / 2e-72 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 229 / 1e-71 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 227 / 1e-71 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 226 / 1e-70 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198800 [exp] 429 / 3e-151 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 417 / 2e-146 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.018G101500 [exp] 239 / 5e-76 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.017G108800 [exp] 224 / 9e-71 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.004G106800 [exp] 221 / 3e-69 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.010G133900 [exp] 217 / 7e-68 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [flax] [poplar] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10041241 pacid=23180018 polypeptide=Lus10041241 locus=Lus10041241.g ID=Lus10041241.BGIv1.0 annot-version=v1.0 ATGGCTGCCACTGGATTCGAAGGCTTCGAGAAGCGCCTTGAGCTACACTTCCATTCTCTTCATCCGTCGCCGTTGGGTCTGAGGCTACTTCTGGATTTTG ATTCCCTGGTGGAAGTCCTAAACGCCGTCCAATGCACCGTCGTTGCTGCCGTCGGGAACCGTTACTTCGATGCTTACGTATTGTCCGAATCAAGCCTATT CGTCTACCCGACCAAGATCATCATCAAGACTTGTGGGACCACTCAGCTCCTCAAATCCATCCGTCCGTTGATCCGACTCGCTGATTCCTCTGCTTTGTCA CTCTGCACCCTCAGGTACACCCGCGGCAGCTTCATCTTTCCTGAATCCCAGCCCTCTCCGCACACCAGCTTCTCTGAGGAGGCCGACTACATCCGCCGCC GACTCCCGGCGTCCCTCCGCTGCCGGAAAGCCTCCGTCATGCCTTCCAGGCTCACTTCCCATTCCTGGCACGTGTTCACCGCAACCACTGATCAAACCGA ACCGGATAACAAACCGAATTATACGGTGGAAGTTTGCATGACCGATCTGGACCGAGTTCAAGCCAAAAAGTTCTTCCAGCCGCCAGGGAAGGGGAGAAAC GGCGACGTTCCGGGGAAGGATATGACGAAGCTAACCGGGATTGGAGAGATCAATCCCCGGGCGATTATTTGTGATTTTGGGTTCGACCCGTGTGGGTACT CGATGAATGGGATCGACCAAGAAAGCTACTCGACCATCCACGTCACGCCGGAGGAAGGTTACAGCTATGCCAGCTACGAGTGGGTGGGGTCCGCTTCGGA TGACGTGGATGATCTGGTGGAAGTGTTGAAGAAAGTGGTCCGAGTCTTTCGGCCTGGGACCATGTCGGTATCCACCACTGGAGCGACACGTGAGGCGTGG GCCCGGGTCGGGCATGCATTGGAGGGGATGAAACGACGTAGTTGTGCGGTGGATGAATACCCGGCGTTTGGGACCGTCGTGTTTCAAACCTTCACAGCCG CCGCCGGCCGACGGAAGGAAGTAGGGGGAAATTATTAA
AA sequence Show only first row Show all	>Lus10041241 pacid=23180018 polypeptide=Lus10041241 locus=Lus10041241.g ID=Lus10041241.BGIv1.0 annot-version=v1.0 MAATGFEGFEKRLELHFHSLHPSPLGLRLLLDFDSLVEVLNAVQCTVVAAVGNRYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLIRLADSSALS LCTLRYTRGSFIFPESQPSPHTSFSEEADYIRRRLPASLRCRKASVMPSRLTSHSWHVFTATTDQTEPDNKPNYTVEVCMTDLDRVQAKKFFQPPGKGRN GDVPGKDMTKLTGIGEINPRAIICDFGFDPCGYSMNGIDQESYSTIHVTPEEGYSYASYEWVGSASDDVDDLVEVLKKVVRVFRPGTMSVSTTGATREAW ARVGHALEGMKRRSCAVDEYPAFGTVVFQTFTAAAGRRKEVGGNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10041241 [exp]	0	1
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	3.9	0.9430
AT4G06744			Leucine-rich repeat (LRR) fami...		Lus10010049 [exp]	5.1	0.9223
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	7.6	0.9389
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	10.8	0.9353
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030897 [exp]	11.0	0.9372
AT1G26140			unknown protein		Lus10017899 [exp]	14.9	0.8637
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	17.1	0.9269
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	17.9	0.9238
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	18.7	0.9267
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	19.1	0.9114

Compare expression of checked genes

Lus10041241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.