Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06270 505 / 1e-179 Protein phosphatase 2C family protein (.1) AT2G20050 418 / 3e-136 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT5G26010 119 / 6e-30 Protein phosphatase 2C family protein (.1) AT4G32950 113 / 5e-28 Protein phosphatase 2C family protein (.1) AT5G27930 113 / 9e-28 Protein phosphatase 2C family protein (.1.2) AT3G05640 112 / 3e-27 Protein phosphatase 2C family protein (.1.2) AT5G01700 110 / 8e-27 Protein phosphatase 2C family protein (.1.2) AT5G10740 104 / 1e-24 Protein phosphatase 2C family protein (.1) AT5G36250 103 / 6e-24 Protein phosphatase 2C family protein (.1) AT4G03415 103 / 8e-24 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021952 [exp] 737 / 0 AT3G06270 447 / 2e-157 Protein phosphatase 2C family protein (.1) Lus10034009 [exp] 631 / 0 AT3G06270 506 / 5e-180 Protein phosphatase 2C family protein (.1) Lus10012768 [exp] 625 / 0 AT3G06270 502 / 2e-178 Protein phosphatase 2C family protein (.1) Lus10034955 [exp] 401 / 9e-130 AT2G20050 1472 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10012976 [exp] 301 / 2e-93 AT2G20050 1269 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10029874 [exp] 118 / 2e-29 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 116 / 8e-29 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10015206 [exp] 107 / 3e-25 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 105 / 1e-24 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028300 [exp] 561 / 0 AT3G06270 498 / 4e-177 Protein phosphatase 2C family protein (.1) Potri.008G198700 [exp] 556 / 0 AT3G06270 481 / 1e-170 Protein phosphatase 2C family protein (.1) Potri.018G084900 [exp] 414 / 1e-134 AT2G20050 1461 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Potri.013G012200 [exp] 117 / 4e-29 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 113 / 9e-28 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.006G232700 [exp] 110 / 9e-27 AT5G26010 318 / 7e-108 Protein phosphatase 2C family protein (.1) Potri.005G021900 [exp] 109 / 3e-26 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 106 / 5e-25 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.013G085500 [exp] 105 / 3e-24 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G054200 [exp] 104 / 5e-24 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10041242 pacid=23179576 polypeptide=Lus10041242 locus=Lus10041242.g ID=Lus10041242.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTTCACGGAAGATGCTGCATCCGTTACCCATCGTCATCGGACGGCGGAGGAGGTTCGAGGGATTACCGTCAATTAACAGACGCAGGTAATA AAAGCAAGCATTTGCTCACACAGAGGTCTCTGGAAACTGTCTCTGTTCCTTCTCGCAACTTTAGGTTGCAGTACTCTGTTTTGACTCAGAGGGGTTACTA TCCCGACCAGCCGGATAAAGAGAACGAGGATAGTTTCGTCGTCAAGACACAGCTCCAAGCTAATCCGGACATTCATTTCTTCGGTGTGTTCGACGGGCAC GGCCAATTCGGTGCGCAGTGTTCCACTTTTGTTAAGAACAGGCTAGTTGAGATACTAGAGAACGATTCCACTCTGTCGGATGACCCCATTGAGGCCTACA ATTCGGCATTCTCCATGACAAATTCCGACCTCCATAGAAGTGAGATCGACGATTCGATGAGCGGGACGACTGCTATCACTGTTCTTGTCGTTGGGGATAC AATCTACGTCGCGAATGTTGGAGATTCGAGGGCTGTGATGGGTGTTAGGAGGAGGGATAGGATTGTGGCGGAGGATTTGTCGTGTGATCAAACTCCATTC AGGAAAGATGAGTGTGAAAGGGTGAAGCTTTGTGGGGCTAGAGTGTTGAGTGTTGATCAAGTGGAAGGGCTTAAGGATCCGAATGTACAGTCGTGGGGGG ACGAGGAGAATGATGGAGGTGATCCTCCGAGGTTGTGGGTGCAGGATGGTATGTATCCCGGGACGGCATTTACAAGGAGTGTGGGAGATAGTACTGCTGA GAGGATTGGTGTTATTGCTGAGCCGGAGATCTCGATGCTTCAGCTTGCTTCGGATCATGTGTTCTTTGTTGTAGCAAGCGATGGAGTTTTTGAGTTCCTG TCCAGCCAAGTAGTTGTTGATATGGCTGCAAGATACGGGGATCCCCGGGATGCATGTTCTGCAATTGCTGGAGAGTCGTACAAACTTTGGCTGGAACATG AAAATCGCACAGATGATATTACAATCATAATTGCCCAGATTAAAGATTTGATTACTGTATGTAAACTTCCTCTGTGTAGCTTTGTTTGGAGGATTGAGCC TAAGTGCTCAAGAATGTCAGCTGGTGACGATAGGAACGGCATCACAGTGACAAATAGAATTGAGGCCAGAAGCAAGGGATCTGCTGATCTTTCAATTCAT ACCGAGTACGATATGTATCAGCCAATAAGAACAGAATACTCAGACATGCAAGGTACAGCCAGTCGAAGCCAAGTAGTCATTCCAGATCCCCACCGGAGGC CCTTTGAAGTGGTCAGTTATCTCCATCCTTCTGTAGGCTAA
AA sequence Show only first row Show all	>Lus10041242 pacid=23179576 polypeptide=Lus10041242 locus=Lus10041242.g ID=Lus10041242.BGIv1.0 annot-version=v1.0 MGCVHGRCCIRYPSSSDGGGGSRDYRQLTDAGNKSKHLLTQRSLETVSVPSRNFRLQYSVLTQRGYYPDQPDKENEDSFVVKTQLQANPDIHFFGVFDGH GQFGAQCSTFVKNRLVEILENDSTLSDDPIEAYNSAFSMTNSDLHRSEIDDSMSGTTAITVLVVGDTIYVANVGDSRAVMGVRRRDRIVAEDLSCDQTPF RKDECERVKLCGARVLSVDQVEGLKDPNVQSWGDEENDGGDPPRLWVQDGMYPGTAFTRSVGDSTAERIGVIAEPEISMLQLASDHVFFVVASDGVFEFL SSQVVVDMAARYGDPRDACSAIAGESYKLWLEHENRTDDITIIIAQIKDLITVCKLPLCSFVWRIEPKCSRMSAGDDRNGITVTNRIEARSKGSADLSIH TEYDMYQPIRTEYSDMQGTASRSQVVIPDPHRRPFEVVSYLHPSVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	0	1
AT3G06270			Protein phosphatase 2C family ...		Lus10021952 [exp]	1.0	0.9073
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	1.4	0.9047
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	3.5	0.8778
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10014726 [exp]	3.7	0.8358
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10015356 [exp]	6.0	0.8498
AT5G27690			Heavy metal transport/detoxifi...		Lus10015174 [exp]	6.9	0.8316
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	8.4	0.8405
AT3G10430			F-box and associated interacti...		Lus10007847 [exp]	10.0	0.7981
AT4G28100			unknown protein		Lus10018524 [exp]	10.7	0.8387
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	12.7	0.8309

Compare expression of checked genes

Lus10041242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.