Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03000 397 / 4e-125 RING/U-box superfamily protein (.1.2) AT1G03365 260 / 4e-74 RING/U-box superfamily protein (.1) AT2G35330 192 / 4e-51 RING/U-box superfamily protein (.1.2) AT1G32530 137 / 4e-33 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041245 [exp] 1355 / 0 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041246 [exp] 1264 / 0 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 1260 / 0 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 307 / 4e-94 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 217 / 3e-62 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 213 / 4e-61 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027900 [exp] 986 / 0 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 980 / 0 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 224 / 4e-62 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 207 / 3e-56 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041244 pacid=23179885 polypeptide=Lus10041244 locus=Lus10041244.g ID=Lus10041244.BGIv1.0 annot-version=v1.0 ATGGCATCAATGGTTGCTAAGGCCAGTAGTAGCTGCGGGACTCAAGTGTCATCTTTGGTATCTGTCCCAGGCAAAGGGAGTAGGAACAAGAGAAAATTCC GGGCGGATCCTCCAACCATTGATGCTGAAAAGATAACCCCTTCGCCCCAAAATGAGTGTCCTAGTTATCAATTCTCAGCCGAGAAGTTCGAAGCTACCGC AGTTCATGGACTGACCACTGCTTGTGACCTGTGTGGTATCAATCAAGACTATATAGATGGGTTGAAGCTAAACCTTGGGTTATCTAGTCCTGTATGTTCA TCTGACGTTTTGCCTAGCCAGCCAAGAGGGGAATTCACATTGGAAGAATCACATGATCCAGATTGGAGTCATATTACAGAGTCCCAATTGGACGAGCTTG TTTTGAGCAATCTGAATGCGATATTCAAAAGTGCAATTAAAAAAATTGTGGCCTGTGGATTTACTGAAGAAGTGGCTACGAAGGCCGTTTTGAGGTCTAG TGTTTGTTCTGGGTGTAAGGACACAGTATCAAATATAGTTGATAATACTTTAGAGTTTCTCCGAAATGGCCAGGAGATTGACCCTTCTCGAGAGCATTGT TTTGGTGATTTACAGCAATTACAGAAGTATATTTTGGGTGAATTAGTTTTTTTACTAAGGGAAGTTAGGCCTCTCTTCAGTACTGGGGATGCAATGTGGT GCCTTCTGGTCTGTGACATGAATCTTTCTCATGCTTGTGCAATGGGTGGTGATACAATGATCAGTGGTTCTGCTGATGGGACCTCAAATGTGGCTTCTTG CACTTCTCCACAAACTCAGATGAAACCAAAATCGGAAGGTCCTGAATCAAATGTTTCTACCCCTTTGAAGCCAGTGCCCTCAATACCTAGTTCCCGTAAT CTGCAATTTGAGACAAGCATAAGTGTCCCAAGGGTAACCCATGTGACAAAACCAAAGAACTCTGCTGCTCTTAGTGGTCTTGTATCAGATAAGGAGGGAT CAACTTCTGCATTTGATCCTGTAGATAAATTCTTCAACATTGCCGGACAATCTCAGTCACCTAAAATGGAAGAAAAGTTTACAGTTACAAGAAAGGTGCA TTCTGGTAGCACGAAGAGAGAATTCATTCTCAGGCAGAAATCATTACATCTTGAGAAAGGCTACCGCACTTACGGGTCTAAAGGTTCATTGAGATCTGGG AAATTGAGTGGTTTGGGTAATTTAGGTTTAGACAAGAAACAGAAATCTATTTCAGATTCAACTTCCGTTAATATCAAGAATTCCCCCATAAGAATAAGTA AGGCAGTTGGAGCTTATACCTGTCAAGATGGTGGGAATCAAAGCCTTCCAATCAATTCCGGACTGTCATCCTCGGTCTCGTTTAGTTTGGAGGCTCCTAG TGCTGCTCCTTTTTGTTCTAAAACCAACTTCTTGCAGGTATTACCCCCGACCAATGGCTTGCCTGCATTACCTCCAGTCAGTGCTATACCTGGACTGTCG ACTGCAGACACTGAGCTTTCCCTTTCACTCCTCGCGAAAAGCAGCTCCAGTTTGGTTTCTGTTAGATGTCATAATATTGCTACCATGTCATTGGATAAGC CTATGACACCGTGGGTTCCTCAAGACAAGAAGGATGAAATGATTGCTAAGCTTCTTCCTAGAGTTCGAGAACTGCAAAATCCTAGAGTTCGACTACTGCA AAATCAGCTTCAAGAATGGACAGAATGGGTAAATCAGAAGGTTATGCAGGCTGCTAGAAGACTAAGTAAGGACAAGGCTGAACTTAAATTACTGAGACAA GAGAAAGAGGAAGTTGAACGGCTCAAGAAGGAGAAACAGACTTTAGAAGAGAATACCATGAAAAAGCTAAATGAAATGGAGAATGCCTTGCGTAAGGCCA GTGGACAGGTGGAGAGAGCTAATTCTGCTGTTCGTAGGCTTGAGGTGGAAAATGCTGCACTTCGGCAGGAAATGGAAGCTGCAAAACTACGTGCTGCTGA GTCAGCTACTAGCTGTCAGGATGTATCAAAGAGGGAGAAGAAGACATTGATAAAGCTTCAGTCAAAGGAGAAGCAGAAGGGGCTGCTCCAGGACGAGCTT GGGACTGAAAAGCGCAAGGTTGCACTCCTGCTACATGATTTGGAGGTTGCCAAACAAAAACAAGAGCAACAAGAGGGTAGATGGCAGCAGGAAGAGAAGG CAAATGAAGAGCTGCTTCGGCAAGCCGGTGAAATAAGAAAAGAAAGAGATAGAATTGAGGCATCAACAAAATCTGAAGAGGATATGATCAAATTAAAGGC AGCAAACAGTCTTCAAAAGTACAAAGATGACATACATAAGCTTGAGAAGGAGATATCCAAGCTCAGACTGAAGGCCGACTCATCAAAGATCGCTGCACTT CGGAGGGGGATCGATGGAAACCATGATATCAAGGCTGGAGATGTCAAAAGCAATCCTGCACAAGAGAGATGGACAAATTACGTCTCCGAATTAGGCACAG ATCATCTCAGTGATTACTCGGTTGAGCGAGAAAGGGAGTGTGTGATGTGCCTGTCAGAGGCGATGTCAGTGGTGTTCCTCCCTTGTGCACATCAGGTGGT ATGCACATCATGCAATGAGCTCCATGAGAAGAAAGGGATGACAGATTGTCCTTCTTGCAGGACCCACATCCGGCGCCGCATTCGAGTACGTATGGGTCGC TCTTAG
AA sequence Show only first row Show all	>Lus10041244 pacid=23179885 polypeptide=Lus10041244 locus=Lus10041244.g ID=Lus10041244.BGIv1.0 annot-version=v1.0 MASMVAKASSSCGTQVSSLVSVPGKGSRNKRKFRADPPTIDAEKITPSPQNECPSYQFSAEKFEATAVHGLTTACDLCGINQDYIDGLKLNLGLSSPVCS SDVLPSQPRGEFTLEESHDPDWSHITESQLDELVLSNLNAIFKSAIKKIVACGFTEEVATKAVLRSSVCSGCKDTVSNIVDNTLEFLRNGQEIDPSREHC FGDLQQLQKYILGELVFLLREVRPLFSTGDAMWCLLVCDMNLSHACAMGGDTMISGSADGTSNVASCTSPQTQMKPKSEGPESNVSTPLKPVPSIPSSRN LQFETSISVPRVTHVTKPKNSAALSGLVSDKEGSTSAFDPVDKFFNIAGQSQSPKMEEKFTVTRKVHSGSTKREFILRQKSLHLEKGYRTYGSKGSLRSG KLSGLGNLGLDKKQKSISDSTSVNIKNSPIRISKAVGAYTCQDGGNQSLPINSGLSSSVSFSLEAPSAAPFCSKTNFLQVLPPTNGLPALPPVSAIPGLS TADTELSLSLLAKSSSSLVSVRCHNIATMSLDKPMTPWVPQDKKDEMIAKLLPRVRELQNPRVRLLQNQLQEWTEWVNQKVMQAARRLSKDKAELKLLRQ EKEEVERLKKEKQTLEENTMKKLNEMENALRKASGQVERANSAVRRLEVENAALRQEMEAAKLRAAESATSCQDVSKREKKTLIKLQSKEKQKGLLQDEL GTEKRKVALLLHDLEVAKQKQEQQEGRWQQEEKANEELLRQAGEIRKERDRIEASTKSEEDMIKLKAANSLQKYKDDIHKLEKEISKLRLKADSSKIAAL RRGIDGNHDIKAGDVKSNPAQERWTNYVSELGTDHLSDYSVERERECVMCLSEAMSVVFLPCAHQVVCTSCNELHEKKGMTDCPSCRTHIRRRIRVRMGR S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03000			RING/U-box superfamily protein...		Lus10041244 [exp]	0	1
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10007926 [exp]	1.4	0.8536
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	2.4	0.8554
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	2.4	0.8334
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	8.5	0.8299
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	9.9	0.8095
AT4G24880			unknown protein		Lus10029244 [exp]	11.9	0.7285
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	15.3	0.8298
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	15.6	0.7736
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	15.7	0.8074
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	16.7	0.8002

Compare expression of checked genes

Lus10041244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.