Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03000 387 / 2e-121 RING/U-box superfamily protein (.1.2) AT1G03365 343 / 1e-104 RING/U-box superfamily protein (.1) AT2G35330 191 / 1e-50 RING/U-box superfamily protein (.1.2) AT1G32530 143 / 5e-35 RING/U-box superfamily protein (.1) AT3G53410 47 / 4e-05 RING/U-box superfamily protein (.1) AT4G24204 42 / 0.0003 RING/U-box superfamily protein (.1.2.3) AT5G19080 43 / 0.0006 RING/U-box superfamily protein (.1) AT1G54150 43 / 0.0007 E3 Ubiquitin ligase family protein (.1) AT3G09770 43 / 0.001 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041244 [exp] 1323 / 0 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10041246 [exp] 1256 / 0 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 1241 / 0 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 326 / 3e-101 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 211 / 3e-60 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 208 / 4e-59 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 51 / 3e-06 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10000533 [exp] 49 / 1e-05 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10037412 [exp] 47 / 5e-05 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027900 [exp] 967 / 0 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 956 / 0 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 224 / 4e-62 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 203 / 5e-55 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.014G138000 [exp] 50 / 4e-06 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.010G070750 [exp] 49 / 2e-05 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.006G128700 [exp] 48 / 2e-05 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.005G036400 [exp] 47 / 4e-05 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 47 / 4e-05 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.018G011300 [exp] 47 / 4e-05 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041245 pacid=23179740 polypeptide=Lus10041245 locus=Lus10041245.g ID=Lus10041245.BGIv1.0 annot-version=v1.0 ATGGCACCAATGGTAGCTAAGGCCAGTAGTAGCTGCGGGACTCAAGTCTCATCTTTGGCATCTGTCCCAGGAAAAGGGAGTAGCTACAAAAGAAAATTCC GGGCTGATCCTCCGATTGTTGATACTGAAAAGATAACCCCTTCACCTCAAAATGAGTGCCCTAGTTATCAATTCTCTGCTGAGAAGTTTGAACCTACTGC AGTTCATGGATTGACCACTGCCTGTGACCTGTGTGGTGTAAGTCAAGATTATACAGATGGGTTGAAGCTAAACCTTGGGTTATCTAGTCCTGTAAGTTCA CCTGAGGTTTTGCCTAGCCAGCCTAGAGAGGAACTTGCATCAGAAGAATCACATGATCTTGATTGGAGTCATATTACAGAGTCCCAATTGGAAGAGCTTG TTTTGAGCAATTTGAATGCGATATTCAAAAGTGCAATCAAAAAAATCGTTGCCTGTGGATTTACTGAAGAAGTTGCAACGAAGGCGGTTTTGAGGTCTAG TGTTTGTTATGGGTGTAAGGACATAGTATCAAATATAGTTGATAATACTTTAGAGTTTCTCCGGAATGCTCAGGAGATTGACCCTTCTGGAGAGGATTGT TTTGGTGATTTAAAGCAATTACAGAAGTATATTTTGGCTGAATTAGTTTTTTTACTGAGGGAAGTTAAGCCTTTCTTCAGTACTGGGGATGCAATGTGGT GCCTTCTGGTCTGTGACATGAATCTTCCTCATGCTTGTGCAATGGATGGTGATCCAATGATCAGTGATTCTGCTGATGGGACCTCACATGGGACTTCTTG CCCTCCCCCAGACACTCAAATAAAACCAAACTCTGAAGGTCCTGAATCAAATCTTACTACCCCTTTGAAGCCAGTGCCCTCAATACCTTGTTCCCGTAAT CTTCAATTTGAGACAAGCAGCAATATCCCAAAGGCTGTACATGTAACAAAATCAAAGAACTCTGCTGCTCTTAAAGGTCTTGTATCAGATAAGGAGGGAT CGACTTCTGCATTTGATCCTGTAGATAAATCCTTCAACATTGCAGGACAATCTCAGTCACATGTGATGGAAGAAAAGTTTACAGTTACAAGAAAGGTGCA TTCTGGCAGCACCAAGAGAGAATTCATTCTCAGGCAGAAGACATTACATCTTGAGAAAGGCTACCGAACTTACGGGTCTAAAAGTTCATTGAGATCTGGG AAATTGAGTGGTTTGGGTAATTTAGTTTTATACAAGAAACTGAAGTCTATTTCAGATTCTACTTCCGTTAATATCAAGAATTCCCCCATAAGAATAAATA AGGCAGTCGAAGCTTATACACGTCAAGATGGTGGGAATCAAAGCCTTCCAATCAGTTCTGGACTGTCATCCTCAGTCTCGTTTAGTTTGGAGGCTCCTAG TGCTGCTCCTTTTTGTTCTAAAACCAACTTCTTGCCGGTATTACCCCCAACCAATGGCTTGCCTGCATTACCTCCAGTCAATGCTATACCTGGACTATCG ACTGCTGACACTGAGCTTTCGCTTTCACTCCCTGCGAAAAGCAGCTCCAGTTTGGATTCTGTTAGATGTCATAATATTTCTACCTTGCTAATCGATAAGC CTATGATACCGTGGGTTCTTCAGGACAAGAAGGATGAGATGATTGTTAAGCTTCTTCCTAGAGTTCGACTACTGCAATTTCAGCTTCAAGAATGGACAGA GTGGGTAAATCAGAAGGTTATGCAGGCTGCTAGAAGGCTAAGTAAGGACAAGGCTGAACTTAAATTACTGAGACAAGAGAAAGAGGAAGTTGAACGGCTC AAGAAGGAGAAACGGACTTTAGAAGAGAATACCATGAAAAAGCTAAATGAAATGGAGAATGCCTTGCGTAAGGCCAGTGGACAGGTGGAGAGAGCTAGTT CTGCTGTTCGTAGGCTTGAGGTGGAAAATGCTGCACTTCGGCAGGAAATGGAAGCTGCAAAACTACGTGCAGAAGAGTCAGCTGCTAGCTGCCAGGATGT ATCAAAGAGGGAGAAGAAGACATTGATACAGCTTCAGTCTCGGGAGAAACAGAAAGGGCTGCTCCAGGAGGAGCTTGGGACTGAAAAGCGCAAGGTTTCA CTCCTGCTCCATGATTTGGAGGTTGCCAAACAGAAACAAGAGCAACAAGAGGGTCGATGGCAGCAGGAAGAGAAGGCAAATGAAGAGCTGCTTCGGCAAG CTGGTGAAACAAGAAAAGAAAGAGACAGAATTGAGGCTTCAACAAAATCTGAAGAGGATATGATCAAATTAATGGCAGCAAACAGTCTTGAAAAGTACAA AGATGATATACAGAAGCTTGAGAAAGAGATATCCAAGCTCAGACTGAAGGTTGACTCATCAAAGATTGCTGCACTTCGGAGGGGGGTCGATGGAAATCAT GCAACCAAGGCTGCACAGAAGGAGAAGTGGACAAATTACGTCTCGGAATTAGCCACTGATCTCAGTGACTACTCGGAGAATGGAGGAGTTGAGCGAGAAA GGGAGTGTGTGATGTGCCTGTCAGAGGCGATGGCAGGGGTGTTCCTCCCTTGTGCACATCAGGTGGTATGCATATCATGCAATGAGCTCCATGAGAAGAA AGGGATGAAAGATTGTCCTTCCTGCAGGAGCCATATCCAGCGGCGCATTCGAGTACGTAACGGTCGATCTTAG
AA sequence Show only first row Show all	>Lus10041245 pacid=23179740 polypeptide=Lus10041245 locus=Lus10041245.g ID=Lus10041245.BGIv1.0 annot-version=v1.0 MAPMVAKASSSCGTQVSSLASVPGKGSSYKRKFRADPPIVDTEKITPSPQNECPSYQFSAEKFEPTAVHGLTTACDLCGVSQDYTDGLKLNLGLSSPVSS PEVLPSQPREELASEESHDLDWSHITESQLEELVLSNLNAIFKSAIKKIVACGFTEEVATKAVLRSSVCYGCKDIVSNIVDNTLEFLRNAQEIDPSGEDC FGDLKQLQKYILAELVFLLREVKPFFSTGDAMWCLLVCDMNLPHACAMDGDPMISDSADGTSHGTSCPPPDTQIKPNSEGPESNLTTPLKPVPSIPCSRN LQFETSSNIPKAVHVTKSKNSAALKGLVSDKEGSTSAFDPVDKSFNIAGQSQSHVMEEKFTVTRKVHSGSTKREFILRQKTLHLEKGYRTYGSKSSLRSG KLSGLGNLVLYKKLKSISDSTSVNIKNSPIRINKAVEAYTRQDGGNQSLPISSGLSSSVSFSLEAPSAAPFCSKTNFLPVLPPTNGLPALPPVNAIPGLS TADTELSLSLPAKSSSSLDSVRCHNISTLLIDKPMIPWVLQDKKDEMIVKLLPRVRLLQFQLQEWTEWVNQKVMQAARRLSKDKAELKLLRQEKEEVERL KKEKRTLEENTMKKLNEMENALRKASGQVERASSAVRRLEVENAALRQEMEAAKLRAEESAASCQDVSKREKKTLIQLQSREKQKGLLQEELGTEKRKVS LLLHDLEVAKQKQEQQEGRWQQEEKANEELLRQAGETRKERDRIEASTKSEEDMIKLMAANSLEKYKDDIQKLEKEISKLRLKVDSSKIAALRRGVDGNH ATKAAQKEKWTNYVSELATDLSDYSENGGVERERECVMCLSEAMAGVFLPCAHQVVCISCNELHEKKGMKDCPSCRSHIQRRIRVRNGRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	1.0	0.9182
AT4G03000			RING/U-box superfamily protein...		Lus10041244 [exp]	2.4	0.8554
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	2.8	0.8888
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	3.7	0.8318
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037602 [exp]	4.8	0.8043
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	7.3	0.8714
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	8.0	0.8632
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	8.4	0.8571
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	8.4	0.8544
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	10.2	0.8518

Compare expression of checked genes

Lus10041245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.