Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03000 405 / 3e-128 RING/U-box superfamily protein (.1.2) AT1G03365 371 / 2e-115 RING/U-box superfamily protein (.1) AT2G35330 213 / 4e-58 RING/U-box superfamily protein (.1.2) AT1G32530 154 / 8e-39 RING/U-box superfamily protein (.1) AT3G53410 49 / 1e-05 RING/U-box superfamily protein (.1) AT1G68820 48 / 3e-05 Transmembrane Fragile-X-F-associated protein (.1) AT5G19080 46 / 9e-05 RING/U-box superfamily protein (.1) AT4G24204 44 / 9e-05 RING/U-box superfamily protein (.1.2.3) AT3G09770 45 / 0.0001 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT5G03200 45 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021954 [exp] 1389 / 0 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10041245 [exp] 1214 / 0 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 1181 / 0 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 308 / 2e-94 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 232 / 7e-68 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 223 / 1e-64 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10000533 [exp] 49 / 1e-05 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10041300 [exp] 48 / 2e-05 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 48 / 3e-05 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027900 [exp] 904 / 0 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 895 / 0 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 242 / 2e-68 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 222 / 2e-61 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.006G128700 [exp] 52 / 1e-06 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.013G025400 [exp] 49 / 1e-05 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.014G138000 [exp] 47 / 6e-05 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.005G225300 [exp] 46 / 0.0001 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G116400 [exp] 45 / 0.0001 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.015G050300 [exp] 45 / 0.0002 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041246 pacid=23179567 polypeptide=Lus10041246 locus=Lus10041246.g ID=Lus10041246.BGIv1.0 annot-version=v1.0 ATGGTTGCTAAGGCCAGTAGTAGCGGCGGGACTCAAGTGTCATCTTCGGTATCTGTCCCGGGAGAAGGGAGTAGGAACAAGAGAAAATTCTGGGCTGATC CTCCGACCGTTGATGCTGAAGAGATAACCTCTTCGCCCCAAAATGAGTGCCCTAGTTATCAATTCTCTGCTGAGAAGTATGAAGCTGCCGCAGTGCATGG ACTGACCACTGCCTGTGACCTGTGCGGTGCCAGTCAAGATTCTATAGATGAGTTGAAGCTAAACCTAGGGTTATCTAGTCCTGTAAGTTCATCTGAGGTT TTGCCTAGCCAGCCTAGTGGGGAACTCGCGTTAGAAGAATCACATGATCCGGATTGGAGTCGTATTACAGAGTCCCAATTGGAAGAGCTTGTTTTGAGTA ATTTGAATACGATATTCAAAAGTGCAATTGAAAAAATTGTGGCCTGTGGATTTACCGAAGAAGTGGCTACGAAGGCGATTTTCAGGTCTAGTGTTTGTGA TGGTTCTAAGGACACAGTATCAAATATAGTTGATAATACTTTAGAGTTTCTCCGAAATGGTCAGGATATTGACCCTTCTAGAGAGCATTGTTTTGATGAC TTACAGCAATTCCAGAAGTATATTTTGGCTGAATTAGTTTGTTTGGTGAGGGAAGCTAGGCCTGTCTGCAGTACCGGGGATGCAATGTGGTGCCTTCTGA TCTCTGACATGAATGTTTCTCATGCTTTTGCAACGGATGGTGATCCAATGATCAGTGGTTCTTCTGATGGGACCTCACATGAGCCTTCTTGCACTCCGCA ACAAACACAAATAGAACCAAAATCTGAAGGTCCTGAATCAATTGATACTACCCCTTTGAAGTCAGAGCCCTCAGTACCTTGTTCCCGAAATCTTGAGACA AGCAGCAACATCCCAAAGGCTGTCCATGTGACAAAACCAAAGAAATCTGCTGCTCTTAATGGTCTAGTATCAGATAAGGAGGGATCAACTTCTGCATTTG ATCCTGTAGATAAATTCTTCAACATTGCAGGACAATCTCAGTCACATGTGATGGAAGAAAAGTTTACAGTTACAAGAAAGGCTGTTTCTGGTAGCACCAT GAGAGAATTCATTCTCAGGCAGAGGTCATCATTACATCTTGAGAAAGGCTACCGAACTTACGGGTCCAAAGGTTCATTGAGGTCTGGGAAATTGAGTGGT TTGGGTAATATAGTCAAACTGAAGTGTGTTTCAGATTCTACTTCAGTAAATTGCAAGAATTCATCTATAAGATTAAGTATGGTAGTAGGAGCTTATACCC CTCAAGATGGTGGGAATCAAAGCCTTCCAAACAATTCCAGACTCTCATCCTCAGTCTCATCTAGTCAGGAGGCTCCTAGTGCTGCTCTTTGTCCTAAACC CAACATCCCTCCGGTATCACCCCAGACCAATGGCTTGCCTGCAAAACCTCCAGTCAGTGCTATACCTGGACTATCGACAGACACTGAGCTTTCGCTTGCA CTCCCTGCGGAAAGCAGCTCCAGTTTGGATTCTGTTGGATGTCATAATATTTCTACCTTGCCAATCGATAAGCTTACGATACCGTGGGTTCCTCAGGACA AGAAGGATGAGGTGATTGTTAAGCTTCTTCCTAGAGTTCGACTACTGCAAAATCAGCTTCAAGAATGGACAGAATGGGTGAATCAGAAGGTTATGCAGGC TGCTAGAAGACTAAGTAAGGACAAGGCTGAACTTAAATTACTGAGACAAGAGAAAGAGGAAGTTGAACGACTCAAGAAGGAGAAACAGACTTTAGAAGAA AACACCATGAAAAAGCTTAATGAAATGGAGAATGCCTTGCGTAAGGCCAGTGGACAGGTGGAGAGAGCTAGTTCTGCTGTTCGTAGGCTTGAGGTGGAAA ATGCTGCACTTCGGCAGGAAATGGAAGCTGCAAAACTACGTGCTGCAGAGTCAGCTACTAGCTGTCAGGATGTATCAAAGAGGGAGAAGAAGACATTGAT GAAACTTCAGTCACAGGAGAAACAGAAAGGGCTGCTCCAGGAAGATCTTGGGACTGAAAAGCGCAAGGTTTCGATCCTGCTACATGATCTGGAGGTTGCC AAACGAAAACAAGAGCAACGAGAGGGTCGATGGCAGCAGGAAGAGAAGGCAAATGAAGAGCTGCTTCGGCAAGCCGGTGAAACAAGAAAAGAAAGAGATA GAATTGAGGCATCAACAAAATCTGAAGAGGATATGATGAAATTAAAGGCAGCAAACAGTCTTCAGAGGTACAAAGATAACATAGAGAAGCTTGAGAAAGA AATATCCAAGCTCAGACTGAAGGTTGACTCATCAAAGATTGCTGCACTCCGAAAGGGGAACAATGGAAACCAAGCTACCAAGGCTGTAGATCTCAAAAGC AATCCTGCACAGAAGGAGAGGTGGACAAATTACGTCTCGGAATTAGGCACAGATCTGAGTGACTACTCGGAGAAGGGAGGAGTTGAGCGAGAAAGGGAGT GTGTGATGTGCTTATCAGAGGCGATGTCAGTGGTGTTCCTCCCTTGTGCACATCAGGTGGTATGCACATCTTGCAATGAGCTCCATGAGAAGAAAGGGAT GAAGGATTGTCCTTCTTGCAGGAGCCATATCCAGCGGCGCATTCGAGTTCGTAACGGTCGCTCTTAG
AA sequence Show only first row Show all	>Lus10041246 pacid=23179567 polypeptide=Lus10041246 locus=Lus10041246.g ID=Lus10041246.BGIv1.0 annot-version=v1.0 MVAKASSSGGTQVSSSVSVPGEGSRNKRKFWADPPTVDAEEITSSPQNECPSYQFSAEKYEAAAVHGLTTACDLCGASQDSIDELKLNLGLSSPVSSSEV LPSQPSGELALEESHDPDWSRITESQLEELVLSNLNTIFKSAIEKIVACGFTEEVATKAIFRSSVCDGSKDTVSNIVDNTLEFLRNGQDIDPSREHCFDD LQQFQKYILAELVCLVREARPVCSTGDAMWCLLISDMNVSHAFATDGDPMISGSSDGTSHEPSCTPQQTQIEPKSEGPESIDTTPLKSEPSVPCSRNLET SSNIPKAVHVTKPKKSAALNGLVSDKEGSTSAFDPVDKFFNIAGQSQSHVMEEKFTVTRKAVSGSTMREFILRQRSSLHLEKGYRTYGSKGSLRSGKLSG LGNIVKLKCVSDSTSVNCKNSSIRLSMVVGAYTPQDGGNQSLPNNSRLSSSVSSSQEAPSAALCPKPNIPPVSPQTNGLPAKPPVSAIPGLSTDTELSLA LPAESSSSLDSVGCHNISTLPIDKLTIPWVPQDKKDEVIVKLLPRVRLLQNQLQEWTEWVNQKVMQAARRLSKDKAELKLLRQEKEEVERLKKEKQTLEE NTMKKLNEMENALRKASGQVERASSAVRRLEVENAALRQEMEAAKLRAAESATSCQDVSKREKKTLMKLQSQEKQKGLLQEDLGTEKRKVSILLHDLEVA KRKQEQREGRWQQEEKANEELLRQAGETRKERDRIEASTKSEEDMMKLKAANSLQRYKDNIEKLEKEISKLRLKVDSSKIAALRKGNNGNQATKAVDLKS NPAQKERWTNYVSELGTDLSDYSEKGGVERERECVMCLSEAMSVVFLPCAHQVVCTSCNELHEKKGMKDCPSCRSHIQRRIRVRNGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03000			RING/U-box superfamily protein...		Lus10041246 [exp]	0	1
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	4.0	0.8073
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	9.3	0.7960
AT4G10930			unknown protein		Lus10032402 [exp]	15.2	0.7705
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	15.5	0.6861
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	17.0	0.7721
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	22.7	0.7655
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	23.9	0.7636
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	27.1	0.7579
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	29.1	0.7278
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10017342 [exp]	30.4	0.7396

Compare expression of checked genes

Lus10041246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.