Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18890 360 / 2e-116 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18860 366 / 7e-115 NSH3 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18910 284 / 1e-87 Protein kinase superfamily protein (.1) AT5G35960 228 / 1e-67 Protein kinase family protein (.1) AT3G05140 214 / 4e-62 RBK2 ROP binding protein kinases 2 (.1) AT5G65530 204 / 3e-58 Protein kinase superfamily protein (.1) AT5G10520 194 / 1e-54 RBK1 ROP binding protein kinases 1 (.1) AT2G18890 170 / 1e-47 Protein kinase superfamily protein (.1.2) AT5G57670 157 / 2e-40 Protein kinase superfamily protein (.2) AT2G13790 132 / 5e-32 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012778 [exp] 447 / 7e-145 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10012776 [exp] 397 / 3e-129 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 391 / 1e-126 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10008192 [exp] 229 / 1e-67 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10018959 [exp] 213 / 3e-61 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10033998 [exp] 218 / 9e-61 AT5G18860 899 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10035949 [exp] 210 / 3e-60 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10025713 [exp] 207 / 8e-60 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10012727 [exp] 197 / 2e-54 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197400 [exp] 388 / 2e-123 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197500 [exp] 379 / 5e-120 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.010G027301 [exp] 297 / 4e-92 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 248 / 4e-75 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.013G028100 [exp] 207 / 3e-59 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.007G011700 [exp] 199 / 3e-56 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.018G091200 [exp] 178 / 2e-49 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 177 / 3e-49 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.006G173700 [exp] 166 / 1e-43 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 159 / 3e-41 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01156 [flax] [poplar] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Lus10041248 pacid=23179985 polypeptide=Lus10041248 locus=Lus10041248.g ID=Lus10041248.BGIv1.0 annot-version=v1.0 ATGGCCATCATGTTGCGTCCAAAACTGCAGGCTATCATAGTAAGTCCGACTGGATGGGCAAATGCTGCTACAATAGATGTGGTTTATGACTTACTCCACA TGATGGGACGCGACGACATCCCTGTTGGCCTTGGAGAAGTGATTGCAGCAAACCAGTCTGATCCAATGTTCCCTTCATCTGTCGGAGTCGGAGGCTGCAA GTATGTCAAGGCCATCCCTCATGGAAGTGGTGGATTTCTTGATTCAGACACTCTATACGGGCTCGCTCGATCTTTGCCTCGTAGCTCAAGAAGGTACACT GCAGAGAACTCGGTAGCATTTGGAGCACCCCGAAACACTGATCATCCCGAGCTCAGGCAGCCCCGTGCTACGGAAGTGTGGGAGTTAGTAATGAAGTCAT TGGAAGCTTCAGGGTCTAAGGATGTGTATGTTGTAGGAGGACATCTCAGCCATGGGAGTCGAGACAAGGGGAACATTCCGAATATGCATCCCAATGCATA TGCAGAGATGAACATGTTTCTCGATCCTTTCGCTGCAAAAACAGTCTTCGAATCGTCAGAACTCAACATTATCCTAATTCCACTTGAAGCTCAGCATAAA GTCAGCTCTAATTTCTCTCAAGTCCTGAAAATGCTAAAGTCGGCAAATAAGACCTCCGAGGACACATTCCTCGGAGAAATCCTTGGTGCAGTATTTTTGG CTGGTGATCATTCCATACTTAAGCCCACCCTACAAGTTCGATCAATCAAGCTCATTGCTGAAGGTGATGAATCAGTAGATGGACAGATGCTGCTTGATGA AGAAGAGGGGAAAATAGTGAATGTATTAAAATACATAGACCCAAATGCATATTACACAGTTCTTGCAAACCAGCTAGGGTTAAAGAAGCAATCTGCTGTT ATAGGAAGCTTTCAGGAGCAAAAAATAATGTGGAGCATGCCACCAGAATTACTCTATGGCAACAACGGTTCTGCCAAAGAAGCCATCCACGATATTGAAC CTCAGCCAATCTCAGACACCTTTGCAGATCTTGACGCGGGATCTTTAGTTACCGAAGAAGAAGCAGCCCTCCAGCCTCAAGTTGAAGCTCCTGAATCTCA AGCAGAGGCAGAGTCGACCAAAACAGAGCATTCATCATCTGAAACAACAAGTGATGAATTGGACGATGATAGATCGGTTGGTAACGTAGAATCAGAAGAA ACCACCGTGAATGATCCTGAACAGCCCAGCACCTCCGGCTCAGACCCAGCTTCCGGCCAACATCCCGTAATATGGCGTGATTTTTTCAAGGCTTTCAAAA AGGGACCTTCTTCTTCATCTTCATCTTCATCTTCACGTAATAACAAGCAGAATATTCCTACTGGGTTTTTAAAGGCTTTCCCGAAATTCACCAGACGGAA AAGCAAACGGATTAGAGACGACGCCGTCATGGACGTTCCGCCGTTAAGCTCCCCTCTGGATGCCGATCTCTGCTACTTGAAGCCTTCTTGGAAGAACTTC ACCCTCTCGGAGTTGCTTGCTGCTACCGATAATTTCAGCCACGAGAACTTGATTGGAGAAGGAGGGTATGCTGAAGTTTACAGAGGGCAATTGTGTGACG GCCAGTTTGTAGCCATAAAAAGACTGGTGAGAGGGTCTTCCCCAGAAGAAATGACCATGGATTTCTTGTCCGAGCTTGGGATTATTTGCCATGTTGACCA TCCTCATATTGCTAAGCTGATTGGTTATGGAGTGGAAGGTGGGATGCACCTCGTTCTTCAGCTGTCCATCAATGGAAGTGTCTCTTCATTACTTTATGGT CCGAGGGAGAAGTTGAGTTGGGAAATCAGATACAAAATAGCTCTAGGAACTGCCAACGGGCTTCTGTATCTTCACCAGGGTTGCCAGAGGAGAATTATCC ACAAAGACATCAAGGCTGCCAATATTCTTCTTACCGAAGATTTCGACGCTCAGAATGTTGCGACGGGGCACAGAGTCGGTAAATCCATGACGAAGCACAT CCGTTCTCGTGACAAATTTATGTACCCGGAATTAGTACAGTTATTGAATCATGTAACGAAAGAATATAAAAGTCGTGACAAATGCAATTCAATCCATGAA TAG
AA sequence Show only first row Show all	>Lus10041248 pacid=23179985 polypeptide=Lus10041248 locus=Lus10041248.g ID=Lus10041248.BGIv1.0 annot-version=v1.0 MAIMLRPKLQAIIVSPTGWANAATIDVVYDLLHMMGRDDIPVGLGEVIAANQSDPMFPSSVGVGGCKYVKAIPHGSGGFLDSDTLYGLARSLPRSSRRYT AENSVAFGAPRNTDHPELRQPRATEVWELVMKSLEASGSKDVYVVGGHLSHGSRDKGNIPNMHPNAYAEMNMFLDPFAAKTVFESSELNIILIPLEAQHK VSSNFSQVLKMLKSANKTSEDTFLGEILGAVFLAGDHSILKPTLQVRSIKLIAEGDESVDGQMLLDEEEGKIVNVLKYIDPNAYYTVLANQLGLKKQSAV IGSFQEQKIMWSMPPELLYGNNGSAKEAIHDIEPQPISDTFADLDAGSLVTEEEAALQPQVEAPESQAEAESTKTEHSSSETTSDELDDDRSVGNVESEE TTVNDPEQPSTSGSDPASGQHPVIWRDFFKAFKKGPSSSSSSSSSRNNKQNIPTGFLKAFPKFTRRKSKRIRDDAVMDVPPLSSPLDADLCYLKPSWKNF TLSELLAATDNFSHENLIGEGGYAEVYRGQLCDGQFVAIKRLVRGSSPEEMTMDFLSELGIICHVDHPHIAKLIGYGVEGGMHLVLQLSINGSVSSLLYG PREKLSWEIRYKIALGTANGLLYLHQGCQRRIIHKDIKAANILLTEDFDAQNVATGHRVGKSMTKHIRSRDKFMYPELVQLLNHVTKEYKSRDKCNSIHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	0	1
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	3.0	0.9520
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	4.2	0.9495
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	6.2	0.9426
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10019231 [exp]	6.5	0.9312
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	7.2	0.9392
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10030257 [exp]	7.5	0.8488
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	8.4	0.9350
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	8.9	0.8739
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	9.9	0.9283
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	10.6	0.8953

Compare expression of checked genes

Lus10041248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.