Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18860 587 / 0 NSH3 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) AT2G39040 311 / 3e-99 Peroxidase superfamily protein (.1) AT3G01190 285 / 3e-89 Peroxidase superfamily protein (.1) AT1G05260 283 / 9e-89 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT1G05240 283 / 2e-88 Peroxidase superfamily protein (.1) AT1G05250 283 / 2e-88 Peroxidase superfamily protein (.1) AT4G11290 276 / 4e-86 Peroxidase superfamily protein (.1) AT5G15180 274 / 4e-85 Peroxidase superfamily protein (.1) AT3G21770 270 / 1e-83 Peroxidase superfamily protein (.1) AT5G51890 258 / 5e-79 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033998 [exp] 676 / 0 AT5G18860 899 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10021956 [exp] 526 / 0 AT2G39040 323 / 6e-108 Peroxidase superfamily protein (.1) Lus10012778 [exp] 453 / 5e-146 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10041250 [exp] 388 / 2e-128 AT2G39040 310 / 3e-104 Peroxidase superfamily protein (.1) Lus10027164 [exp] 281 / 7e-88 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 276 / 8e-86 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 274 / 5e-85 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 270 / 2e-83 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10018374 [exp] 266 / 6e-82 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197400 [exp] 635 / 0 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197500 [exp] 603 / 0 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.012G042800 [exp] 328 / 1e-105 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 299 / 8e-95 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 296 / 9e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 296 / 9e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 296 / 9e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 296 / 9e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 295 / 4e-93 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 273 / 6e-85 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase CL0617 [flax] [poplar] PF01156 [flax] [poplar] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Lus10041249 pacid=23179960 polypeptide=Lus10041249 locus=Lus10041249.g ID=Lus10041249.BGIv1.0 annot-version=v1.0 ATGGTTTCCACCAAGACACCCATCGTCTTCTTGCTTGTTTCTCTCTTGATTTTCGTCCTACCTTATGCCTCTCACGGCAAAGGCCATAATGGTCCTTCCC GGAACGATGATCATCATAAAGGTAAGGGAAATGGACGGCCGGATAAGAACCCCGCGGTGCAGTCTCCAATCCGAAAGGGCTGCCCACAATTCGAAACGAT TGCTAGGGATATCGTTTGGAGTAGGGTAGCTACTGACCCTACCTTGGCTCCCAAGCTACTCAGGCTGCACTTCCATGACTGCTTTGTCAGGGGTTGTGAT GCGTCCATATTGTTGGATTCGACGGCTACGAATTCAGCAGAGAAAGATGCGATTCCAAATCAGTCCGTAAGAGGGTACGAGGTTATCGACGAGATTAAAG CTCGAGTAGAATCGGTTTGCCCTGCAACAGTCTCTTGTGCTGATATCCTTACCTTAGCGGCAAGAGATGCTGTTTCTTTTCAGTTCAAAAGGCCACTGTG GCCGGTTTTCGGAGGGAGGAAAGACGGTCGGGTTTCCTTAGCATCCGAAGCACTAAACTTACCGGCTCCTTTTGAAAATATTACTACGCTCCTCCAAGAA TTCCAAAGCAAAGGCCTGGATCTTCAAGATCTCGTCGTATTGTCAGGGGCGCACACAATCGGGGTGAGTCGGTGCGGGTTGATATCGGGGAGGCTGTTCA ATTTCAGTGGACGAGGGGACACCGACCCATCGATTGCGCCCGGGTTCGCTAGTACCCTAAAAGCACGATGTTCCAGTCCCAACTCAGCTGGAGTAACCTT AGAGCTGGATCCTGGAAGCTCAACTTCCTTCGACGCCCACTACTACCAAGCTGTGGTTGGGAACCAGGGACTCTTGCAATCCGACGCTGCGTTGATGACG GACCAGCGGTCGGCTCTGCTCAGCCGCGCTTTGGCGAGTAATCAGCAGCTTTTCTTCACCATGTTCGCTCGGTCGATGGTGAAGATGGGCGCCATTGTCG AAGGGAGTGGAGGAGAGATTAGGAGGAACTGCCGCTTTGCAGTGACGATCAGTGCCAACAGTTGGAGTGACGCGGGGCATGCTTTAAACCAAATCTATGA CGTTCTACACATGATGGATCGCGACGATGTTTCCGTTGGTGTTGGAGGCGAAGGTGGTGTTCTTGATGATGGAACTATTCTCCCAAATGTTGGTGGATAC CTCCCCTTAATCGAACAGGAAATGACAACAGCAGGAAGTTGCAGATACAGACAGTCCATTCCAGTTGGACAAGGAGGTAGACTTGACATTGATTCTAACT TTGGACTCAAGAGAGAATTCCTTCCTCAGGGAAAGAGGAGATACGTCCCTCTTCGAACCCCGACATCGCAGCAAATCCTGATAGAGAAGGTGTCGAAAGG TCCCATTACCATACTGATGATAGGATCACACTCAAACGTGGCCTACTTTCTAATGCAAAATCCACATCTGAAGAAGAACATTGAGCATATTTACATCATG GGAGGTGGTGTGAGGCCAGGACACCGCGGAAATCTTTATACTTGTTACGCAAGCAACCCTTATGCTGAATTCAACATATTTGCAGACCCTTTTGCTGCAT ACCAGGTCATTAATTCGGGAGTTCCAATCACACTTGTGCCATTGGATGCAACGGACACTGTTCCGGTAGACAAGGAGTTCTTCGAAATGTTTGAAAAGAA ACAGGAGACGTACGAGGCACAATACTGCTTCAAGTCGTTAAAAATGGCGCGGGACACTTGGCCAAATAACCAGTTCTACTCAAACTACTTCTTATGGGAC TCTTTTGCATCTGGAGTGGCTGCTTCTACTGTGATGAATCCACATAACAAAAATGGAGAGAATGAGTTTGCAGAAATGGAGTACATGAACATAACTGTGG TGACCTCAAATGAACCTTATGGAACTAACGACGGCTCGAATCCATTCTTTAACGGCCGACAGTCACCGAAATTCGGCCTAAAGAAAGAAGGGATTCATAG TGGCCATGTCCAGACAAACACATCAGATCCATTCTGCATTGTGAAGAATGGCATAGGGAAATGCCAGGATGGATATACAAAGGAGACAAATGGTTCTGAT TCGGTACGAGTTCTTGTTGCAACAAGATCAAAGCCTTCAAAAGAACCTAATAATAGCCAGCTGAAAATAGAATTTCTCAAGAGCTTCTTAGATGTTCTTA ATGACCCACAACATGCTGGCAAGTTTAATTTCACAAACCAATTGCCTTACTACAGAGAGGTTCTTCACAAACCAGTCTTTGGAAACACAAGACTAGGGAA ACCTGTTGTGTTTGACATGGATATGAGTCCTGGAGATTTCTTGGCTCTATTGTATCTCCTTAAAGCACCAGTAGAAGTCATTGATCTTAAGGTGTCTGTC AGATTATCAGATGTCGTTGCACCATCGAATATTCGATAA
AA sequence Show only first row Show all	>Lus10041249 pacid=23179960 polypeptide=Lus10041249 locus=Lus10041249.g ID=Lus10041249.BGIv1.0 annot-version=v1.0 MVSTKTPIVFLLVSLLIFVLPYASHGKGHNGPSRNDDHHKGKGNGRPDKNPAVQSPIRKGCPQFETIARDIVWSRVATDPTLAPKLLRLHFHDCFVRGCD ASILLDSTATNSAEKDAIPNQSVRGYEVIDEIKARVESVCPATVSCADILTLAARDAVSFQFKRPLWPVFGGRKDGRVSLASEALNLPAPFENITTLLQE FQSKGLDLQDLVVLSGAHTIGVSRCGLISGRLFNFSGRGDTDPSIAPGFASTLKARCSSPNSAGVTLELDPGSSTSFDAHYYQAVVGNQGLLQSDAALMT DQRSALLSRALASNQQLFFTMFARSMVKMGAIVEGSGGEIRRNCRFAVTISANSWSDAGHALNQIYDVLHMMDRDDVSVGVGGEGGVLDDGTILPNVGGY LPLIEQEMTTAGSCRYRQSIPVGQGGRLDIDSNFGLKREFLPQGKRRYVPLRTPTSQQILIEKVSKGPITILMIGSHSNVAYFLMQNPHLKKNIEHIYIM GGGVRPGHRGNLYTCYASNPYAEFNIFADPFAAYQVINSGVPITLVPLDATDTVPVDKEFFEMFEKKQETYEAQYCFKSLKMARDTWPNNQFYSNYFLWD SFASGVAASTVMNPHNKNGENEFAEMEYMNITVVTSNEPYGTNDGSNPFFNGRQSPKFGLKKEGIHSGHVQTNTSDPFCIVKNGIGKCQDGYTKETNGSD SVRVLVATRSKPSKEPNNSQLKIEFLKSFLDVLNDPQHAGKFNFTNQLPYYREVLHKPVFGNTRLGKPVVFDMDMSPGDFLALLYLLKAPVEVIDLKVSV RLSDVVAPSNIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041249 [exp]	0	1
AT1G06980			unknown protein		Lus10026407 [exp]	1.4	0.9713
AT5G20950			Glycosyl hydrolase family prot...		Lus10001151 [exp]	2.0	0.9526
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	2.8	0.9334
AT2G21100			Disease resistance-responsive ...		Lus10027834 [exp]	4.9	0.9276
					Lus10035753 [exp]	8.5	0.9026
AT1G06980			unknown protein		Lus10042244 [exp]	8.7	0.9351
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	11.8	0.9243
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	15.4	0.8468
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	16.7	0.9313
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10003743 [exp]	19.4	0.8852

Compare expression of checked genes

Lus10041249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.