Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39040 310 / 3e-104 Peroxidase superfamily protein (.1) AT4G11290 283 / 5e-94 Peroxidase superfamily protein (.1) AT1G05260 280 / 1e-92 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT1G05250 280 / 1e-92 Peroxidase superfamily protein (.1) AT1G05240 280 / 1e-92 Peroxidase superfamily protein (.1) AT3G01190 267 / 6e-88 Peroxidase superfamily protein (.1) AT5G15180 264 / 1e-86 Peroxidase superfamily protein (.1) AT3G21770 260 / 4e-85 Peroxidase superfamily protein (.1) AT4G36430 254 / 9e-83 Peroxidase superfamily protein (.1) AT2G18150 253 / 3e-82 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021956 [exp] 382 / 3e-131 AT2G39040 323 / 6e-108 Peroxidase superfamily protein (.1) Lus10041249 [exp] 388 / 8e-129 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10018374 [exp] 288 / 7e-96 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 282 / 1e-93 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10027164 [exp] 281 / 3e-93 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 273 / 4e-90 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039680 [exp] 272 / 1e-89 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 270 / 6e-89 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10015127 [exp] 268 / 5e-88 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G042800 [exp] 315 / 2e-106 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 286 / 3e-95 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 283 / 4e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 283 / 4e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 283 / 4e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 283 / 4e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 282 / 1e-93 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 274 / 2e-90 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 271 / 4e-89 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 264 / 2e-86 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10041250 pacid=23179952 polypeptide=Lus10041250 locus=Lus10041250.g ID=Lus10041250.BGIv1.0 annot-version=v1.0 ATGAGTTCCTCCACCACCATGACCACCGTAGTTCTAATCTTGTTCTTTGCCGTGCCTCTGCTTTCGTTTTCGGTCGCCGACGATCATAAACAACATGAAA TTGGGCGGCGGGCTCTGATCGGCCAAGATGATCCGATCAACTCTACTACTGCTACTAATAGTTCAGCAGCACCAAAGGATTGCCCGCAGGTAGAAGCAAT TGCCAGAGACGTCACCTGGAAAAGGGTTGCAGCTAACCCTACTTTGGTACCCAAGTTACTCAGGCTACATTTCCATGACTGCATTATTAAGGGTTGTGAT GGAGCGATATTGTTGGATTCGACGGCTAACCAGAAAGCAGAGAAGGATGCTATTCCGAACTTGTCGGTATCGGGTTACGATGTAATCGACGAGATTAAAG CCGCAGTCGAAAAGGCTTGCCCTGGGACAGTCTCTTGTGCTGACATCGTTGCCTTGGCTGCAAGAGATGCTGTTTCTTTTCAGTTCAAAAAGCCAATCTG GGCGGTGACCATGGGTAGGAAAGATAGTCGAGTTTCCAAGGAATCAGATGCTTTAACAGGCTTGCCAACCCCTGACGCCAACTTCACAGAACTCATTCAG CTATTCAAAACCAAAGGCCTCGATCTCGAGGACCTCGTCGTTTTGTCAGGAGCGCACACAATCGGGGTCAGCCGATGCGGGGCGGTAATAAAGAGGCTAT ACAACTTCTCGGGAGCCGGGGACACCGATCCAGCCATGGCACCAAATTACGCACAAACGCTCAAGTCGAAATGCTCGAATTTTAACCCTAATGTCCAAGT TGAGCTCGACCCCGGAAGCTCGGGCACCTTCGACACTCATTACTTCAAGGCCTTGAACGAAAAGCAAGGACTTTTACCGTCAGACGTTACGTTGCTGACG GACCCACGATCGGCCGAAATGAGCCGGAAATTGGCAGGCAACGAACAGCTTTTCCTTGACAAGTTTGGTAAGTCTATGGTGAAGTTGGGCGGCCTTGGCA TGGGAGTTAGTGAAGGTGAGATTAGGAAAAATTGTCACCATGTTAACTGA
AA sequence Show only first row Show all	>Lus10041250 pacid=23179952 polypeptide=Lus10041250 locus=Lus10041250.g ID=Lus10041250.BGIv1.0 annot-version=v1.0 MSSSTTMTTVVLILFFAVPLLSFSVADDHKQHEIGRRALIGQDDPINSTTATNSSAAPKDCPQVEAIARDVTWKRVAANPTLVPKLLRLHFHDCIIKGCD GAILLDSTANQKAEKDAIPNLSVSGYDVIDEIKAAVEKACPGTVSCADIVALAARDAVSFQFKKPIWAVTMGRKDSRVSKESDALTGLPTPDANFTELIQ LFKTKGLDLEDLVVLSGAHTIGVSRCGAVIKRLYNFSGAGDTDPAMAPNYAQTLKSKCSNFNPNVQVELDPGSSGTFDTHYFKALNEKQGLLPSDVTLLT DPRSAEMSRKLAGNEQLFLDKFGKSMVKLGGLGMGVSEGEIRKNCHHVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	1.0	0.9691
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	3.7	0.9314
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	4.9	0.9248
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	5.7	0.9248
					Lus10000749 [exp]	6.0	0.9245
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	6.3	0.9248
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	9.8	0.9023
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	10.6	0.8890
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	10.9	0.9242
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	11.0	0.8933

Compare expression of checked genes

Lus10041250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.