Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021957 [exp] 124 / 1e-35 AT2G39040 114 / 2e-29 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G015100 [exp] 47 / 3e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041251 pacid=23180003 polypeptide=Lus10041251 locus=Lus10041251.g ID=Lus10041251.BGIv1.0 annot-version=v1.0 ATGGACGTCTCTTGCTTTCTTCTTGTGGAGGGAAGTGCAGATTCTGACGAGGATCATGATCAGTACCACCATCACCGTCATCATGGATTAATGAAGAAAT CATCATGTGATCATCATTGTGGTAATTACGATGAAGATCGGAAACATGATCAGCTGGAGGGAACAAATGATGTTGTGATTGATGATGCGGAGTCTTGTAG CTGCGACGAGCCAGAGCTCGACCACCTTCTCTTCCTTCTCAGCCATCATCATCAAGCTGCTTCTTGCCATGACGATGAAGATGACGTTGCTGTTATTGAT GAAGAGGAACCGTCACCACCGAGTAGCGTCAATATTAATGGAGAGGAGAATTATGACAGTAAGTTGAGGATAAGCAGAGAGATTATGGATAGAATGGAGG ATAGTGTGTTCTGGGAAACATGTATGGCTGTAGGCTACCCAAGCCTGTACTGA
AA sequence Show only first row Show all	>Lus10041251 pacid=23180003 polypeptide=Lus10041251 locus=Lus10041251.g ID=Lus10041251.BGIv1.0 annot-version=v1.0 MDVSCFLLVEGSADSDEDHDQYHHHRHHGLMKKSSCDHHCGNYDEDRKHDQLEGTNDVVIDDAESCSCDEPELDHLLFLLSHHHQAASCHDDEDDVAVID EEEPSPPSSVNINGEENYDSKLRISREIMDRMEDSVFWETCMAVGYPSLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041251 [exp]	0	1
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	1.0	0.9825
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	2.4	0.9760
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	2.4	0.9794
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	3.5	0.9742
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	3.5	0.9703
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	5.5	0.9733
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10007907 [exp]	5.5	0.9589
AT4G09890			Protein of unknown function (D...		Lus10028734 [exp]	6.6	0.9341
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	6.7	0.9609
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	7.0	0.9653

Compare expression of checked genes

Lus10041251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.